SCOPe 2.04: Protein: D-ribose-5-phosphate isomerase (RpiA), catalytic domain

Lineage for Protein: D-ribose-5-phosphate isomerase (RpiA), catalytic domain

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.124: NagB/RpiA/CoA transferase-like [100949] (1 superfamily)
core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456
Superfamily c.124.1: NagB/RpiA/CoA transferase-like [100950] (9 families)

Family c.124.1.4: D-ribose-5-phosphate isomerase (RpiA), catalytic domain [75176] (1 protein)
share a common phosphate-binding site with the NagB-like family; part of sheet is folded upon itself and forms a barrel-like structure like the CoA transferase subunits

Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain [75177] (4 species)

Species:

Escherichia coli [TaxId:562] [75178] (3 PDB entries)
1. Domains for 1ks2:
  1. Domain d1ks2a1: 1ks2 A:2-126,A:199-219 [72908]
    Other proteins in same PDB: d1ks2a2, d1ks2b2
    structural genomics
  2. Domain d1ks2b1: 1ks2 B:2-126,B:199-219 [72910]
    Other proteins in same PDB: d1ks2a2, d1ks2b2
    structural genomics
2. Domains for 1lkz:
  1. Domain d1lkza1: 1lkz A:1-126,A:199-219 [73991]
    Other proteins in same PDB: d1lkza2, d1lkzb2
  2. Domain d1lkzb1: 1lkz B:1-126,B:199-219 [73993]
    Other proteins in same PDB: d1lkza2, d1lkzb2
3. Domains for 1o8b:
  1. Domain d1o8ba1: 1o8b A:23-126,A:199-218 [81180]
    Other proteins in same PDB: d1o8ba2, d1o8bb2
    complexed with abf
  2. Domain d1o8bb1: 1o8b B:2-126,B:199-218 [81182]
    Other proteins in same PDB: d1o8ba2, d1o8bb2
    complexed with abf
Haemophilus influenzae [TaxId:727] [82391] (1 PDB entry)
- Domains for 1m0s:
  1. Domain d1m0sa1: 1m0s A:1-126,A:199-219 [78351]
    Other proteins in same PDB: d1m0sa2, d1m0sb2
    structural genomics
    complexed with cit
  2. Domain d1m0sb1: 1m0s B:1-126,B:199-219 [78353]
    Other proteins in same PDB: d1m0sa2, d1m0sb2
    structural genomics
    complexed with cit
Pyrococcus horikoshii [TaxId:53953] [75179] (2 PDB entries)
1. Domains for 1lk5:
  1. Domain d1lk5a1: 1lk5 A:1-130,A:211-229 [73960]
    Other proteins in same PDB: d1lk5a2, d1lk5b2, d1lk5c2, d1lk5d2
    complexed with cl, na
  2. Domain d1lk5b1: 1lk5 B:1-130,B:211-229 [73962]
    Other proteins in same PDB: d1lk5a2, d1lk5b2, d1lk5c2, d1lk5d2
    complexed with cl, na
  3. Domain d1lk5c1: 1lk5 C:1-130,C:211-229 [73964]
    Other proteins in same PDB: d1lk5a2, d1lk5b2, d1lk5c2, d1lk5d2
    complexed with cl, na
  4. Domain d1lk5d1: 1lk5 D:1-130,D:211-229 [73966]
    Other proteins in same PDB: d1lk5a2, d1lk5b2, d1lk5c2, d1lk5d2
    complexed with cl, na
2. Domains for 1lk7:
  1. Domain d1lk7a1: 1lk7 A:1-130,A:211-229 [73968]
    Other proteins in same PDB: d1lk7a2, d1lk7b2, d1lk7c2, d1lk7d2
    complexed with cl, der, na
  2. Domain d1lk7b1: 1lk7 B:1-130,B:211-229 [73970]
    Other proteins in same PDB: d1lk7a2, d1lk7b2, d1lk7c2, d1lk7d2
    complexed with cl, der, na
  3. Domain d1lk7c1: 1lk7 C:1-130,C:211-229 [73972]
    Other proteins in same PDB: d1lk7a2, d1lk7b2, d1lk7c2, d1lk7d2
    complexed with cl, der, na
  4. Domain d1lk7d1: 1lk7 D:1-130,D:211-229 [73974]
    Other proteins in same PDB: d1lk7a2, d1lk7b2, d1lk7c2, d1lk7d2
    complexed with cl, der, na
Thermus thermophilus [TaxId:274] [110512] (3 PDB entries)
Uniprot Q72J47
1. Domain for 1uj4:
  - Domain d1uj4a1: 1uj4 A:3-131,A:206-227 [107894]
    Other proteins in same PDB: d1uj4a2
    complexed with cl
2. Domain for 1uj5:
  - Domain d1uj5a1: 1uj5 A:3-131,A:206-227 [107896]
    Other proteins in same PDB: d1uj5a2
    complexed with 5rp, cl
3. Domain for 1uj6:
  - Domain d1uj6a1: 1uj6 A:3-131,A:206-227 [107898]
    Other proteins in same PDB: d1uj6a2
    complexed with a5p, cl

More info for Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain from c.124.1.4: D-ribose-5-phosphate isomerase (RpiA), catalytic domain

Timeline for Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain from c.124.1.4: D-ribose-5-phosphate isomerase (RpiA), catalytic domain:

Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain from c.124.1.4: D-ribose-5-phosphate isomerase (RpiA), catalytic domain first appeared in SCOP 1.61, called Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain from c.35.1.2: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain from c.124.1.4: D-ribose-5-phosphate isomerase (RpiA), catalytic domain appears in SCOPe 2.03
Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain from c.124.1.4: D-ribose-5-phosphate isomerase (RpiA), catalytic domain appears in SCOPe 2.05
Protein D-ribose-5-phosphate isomerase (RpiA), catalytic domain from c.124.1.4: D-ribose-5-phosphate isomerase (RpiA), catalytic domain appears in the current release, SCOPe 2.08