Lineage for Protein: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2841004Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2841005Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2841375Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (73 proteins)
    also known as short-chain dehydrogenases and SDR family
    parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

    has additional subdomain(s) that are not in the common domain
  6. 2842004Protein dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) [75102] (2 species)

Species:

  1. 2842005Salmonella enterica [311157] (1 PDB entry)
    • Domain for 1kc0:
      • 2842006Domain d1kc0a_: 1kc0 A: [302630]
        automated match to d1kbza_
        complexed with mg, ndp, so4

        has additional subdomain(s) that are not in the common domain
  2. 2842007Salmonella typhimurium [TaxId:90371] [75103] (4 PDB entries)
    1. Domain for 1kbz:
      • 2842008Domain d1kbza_: 1kbz A: [72288]
        complexed with mg
        has additional subdomain(s) that are not in the common domain
    2. Domain for 1kc1:
      • 2842010Domain d1kc1a_: 1kc1 A: [72290]
        complexed with mg, ndp, so4
        has additional subdomain(s) that are not in the common domain
    3. Domain for 1kc3:
      • 2842011Domain d1kc3a_: 1kc3 A: [72292]
        complexed with mg, ndp, trh
        has additional subdomain(s) that are not in the common domain
    4. Domain for 1n2s:
      • 2842009Domain d1n2sa_: 1n2s A: [79857]
        complexed with mg, nai, trs
        has additional subdomain(s) that are not in the common domain

More info for Protein dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from c.2.1.2: Tyrosine-dependent oxidoreductases

Timeline for Protein dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from c.2.1.2: Tyrosine-dependent oxidoreductases:

  • Protein dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from c.2.1.2: Tyrosine-dependent oxidoreductases first appeared in SCOP 1.61
  • Protein dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from c.2.1.2: Tyrosine-dependent oxidoreductases appears in SCOPe 2.07