SCOPe 2.08: Protein: D-hydantoinase

Lineage for Protein: D-hydantoinase

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.92: Composite domain of metallo-dependent hydrolases [51337] (1 superfamily)
pseudobarrel; mixed sheet of 7 strand folded upon itself and "buckled" by two beta-turns
Superfamily b.92.1: Composite domain of metallo-dependent hydrolases [51338] (12 families)
this domain is interrupted by the catalytic beta/alpha barrel domain
Family b.92.1.3: Hydantoinase (dihydropyrimidinase) [75044] (5 proteins)
Protein D-hydantoinase [75045] (4 species)

Species:

Bacillus sp. AR9 [TaxId:301298] [141682] (1 PDB entry)
Uniprot Q5DLU2 2-52,385-460
- Domains for 1yny:
  1. Domain d1ynya1: 1yny A:2-52,A:385-460 [123764]
    Other proteins in same PDB: d1ynya2, d1ynyb2
    complexed with mn
  2. Domain d1ynyb1: 1yny B:2-52,B:385-460 [123766]
    Other proteins in same PDB: d1ynya2, d1ynyb2
    automated match to d1ynya1
    complexed with mn
Bacillus stearothermophilus [TaxId:1422] [75047] (1 PDB entry)
- Domains for 1k1d:
  1. Domain d1k1da1: 1k1d A:1-52,A:385-460 [71979]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
  2. Domain d1k1db1: 1k1d B:1-52,B:385-460 [71981]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
  3. Domain d1k1dc1: 1k1d C:1-52,C:385-460 [71983]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
  4. Domain d1k1dd1: 1k1d D:1-52,D:385-460 [71985]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
  5. Domain d1k1de1: 1k1d E:1-52,E:385-460 [71987]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
  6. Domain d1k1df1: 1k1d F:1-52,F:385-460 [71989]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
  7. Domain d1k1dg1: 1k1d G:1-52,G:385-460 [71991]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
  8. Domain d1k1dh1: 1k1d H:1-52,H:385-460 [71993]
    Other proteins in same PDB: d1k1da2, d1k1db2, d1k1dc2, d1k1dd2, d1k1de2, d1k1df2, d1k1dg2, d1k1dh2
    complexed with zn
Burkholderia pickettii [TaxId:329] [89437] (1 PDB entry)
- Domains for 1nfg:
  1. Domain d1nfga1: 1nfg A:1-51,A:382-457 [85632]
    Other proteins in same PDB: d1nfga2, d1nfgb2, d1nfgc2, d1nfgd2
    complexed with zn
  2. Domain d1nfgb1: 1nfg B:1-51,B:382-457 [85634]
    Other proteins in same PDB: d1nfga2, d1nfgb2, d1nfgc2, d1nfgd2
    complexed with zn
  3. Domain d1nfgc1: 1nfg C:1-51,C:382-457 [85636]
    Other proteins in same PDB: d1nfga2, d1nfgb2, d1nfgc2, d1nfgd2
    complexed with zn
  4. Domain d1nfgd1: 1nfg D:1-51,D:382-457 [85638]
    Other proteins in same PDB: d1nfga2, d1nfgb2, d1nfgc2, d1nfgd2
    complexed with zn
Thermus sp. [TaxId:275] [75046] (2 PDB entries)
1. Domains for 1gkp:
  1. Domain d1gkpa1: 1gkp A:2-54,A:390-459 [70231]
    Other proteins in same PDB: d1gkpa2, d1gkpb2, d1gkpc2, d1gkpd2, d1gkpe2, d1gkpf2
    complexed with epe, so4, zn
  2. Domain d1gkpb1: 1gkp B:2-54,B:390-459 [70233]
    Other proteins in same PDB: d1gkpa2, d1gkpb2, d1gkpc2, d1gkpd2, d1gkpe2, d1gkpf2
    complexed with epe, so4, zn
  3. Domain d1gkpc1: 1gkp C:2-54,C:390-459 [70235]
    Other proteins in same PDB: d1gkpa2, d1gkpb2, d1gkpc2, d1gkpd2, d1gkpe2, d1gkpf2
    complexed with epe, so4, zn
  4. Domain d1gkpd1: 1gkp D:2-54,D:390-459 [70237]
    Other proteins in same PDB: d1gkpa2, d1gkpb2, d1gkpc2, d1gkpd2, d1gkpe2, d1gkpf2
    complexed with epe, so4, zn
  5. Domain d1gkpe1: 1gkp E:2-54,E:390-459 [70239]
    Other proteins in same PDB: d1gkpa2, d1gkpb2, d1gkpc2, d1gkpd2, d1gkpe2, d1gkpf2
    complexed with epe, so4, zn
  6. Domain d1gkpf1: 1gkp F:2-54,F:390-459 [70241]
    Other proteins in same PDB: d1gkpa2, d1gkpb2, d1gkpc2, d1gkpd2, d1gkpe2, d1gkpf2
    complexed with epe, so4, zn
2. Domains for 1gkq:
  1. Domain d1gkqa1: 1gkq A:2-54,A:390-459 [70243]
    Other proteins in same PDB: d1gkqa2, d1gkqb2, d1gkqc2, d1gkqd2
    complexed with zn
  2. Domain d1gkqb1: 1gkq B:2-54,B:390-459 [70245]
    Other proteins in same PDB: d1gkqa2, d1gkqb2, d1gkqc2, d1gkqd2
    complexed with zn
  3. Domain d1gkqc1: 1gkq C:2-54,C:390-459 [70247]
    Other proteins in same PDB: d1gkqa2, d1gkqb2, d1gkqc2, d1gkqd2
    complexed with zn
  4. Domain d1gkqd1: 1gkq D:2-54,D:390-459 [70249]
    Other proteins in same PDB: d1gkqa2, d1gkqb2, d1gkqc2, d1gkqd2
    complexed with zn

More info for Protein D-hydantoinase from b.92.1.3: Hydantoinase (dihydropyrimidinase)

Timeline for Protein D-hydantoinase from b.92.1.3: Hydantoinase (dihydropyrimidinase):

Protein D-hydantoinase from b.92.1.3: Hydantoinase (dihydropyrimidinase) first appeared in SCOP 1.61
Protein D-hydantoinase from b.92.1.3: Hydantoinase (dihydropyrimidinase) appears in SCOPe 2.07