Lineage for Species: Transmissible gastroenteritis virus [TaxId: 11149]

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 proteins)
  6. Protein Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) [74979] (8 species)
    contains an extra alpha-helical domain
  7. Species Transmissible gastroenteritis virus [TaxId:11149] [74980] (3 PDB entries)

PDB entries in Species: Transmissible gastroenteritis virus [TaxId: 11149]:

  1. Domain(s) for 1lvo:
    1. Domain d1lvoa_: 1lvo A: [74284]
      complexed with dio, mrd, so4
    2. Domain d1lvob_: 1lvo B: [74285]
      complexed with dio, mrd, so4
    3. Domain d1lvoc_: 1lvo C: [74286]
      complexed with dio, mrd, so4
    4. Domain d1lvod_: 1lvo D: [74287]
      complexed with dio, mrd, so4
    5. Domain d1lvoe_: 1lvo E: [74288]
      complexed with dio, mrd, so4
    6. Domain d1lvof_: 1lvo F: [74289]
      complexed with dio, mrd, so4
  2. Domain(s) for 1p9u:
    1. Domain d1p9ua_: 1p9u A: [88001]
      complexed with mrd, so4
    2. Domain d1p9ub_: 1p9u B: [88002]
      complexed with mrd, so4
    3. Domain d1p9uc_: 1p9u C: [88003]
      complexed with mrd, so4
    4. Domain d1p9ud_: 1p9u D: [88004]
      complexed with mrd, so4
    5. Domain d1p9ue_: 1p9u E: [88005]
      complexed with mrd, so4
    6. Domain d1p9uf_: 1p9u F: [88006]
      complexed with mrd, so4
  3. Domain(s) for 2amp:
    1. Domain d2ampa_: 2amp A: [127021]
      automated match to d1lvod_
      complexed with i12
    2. Domain d2ampb_: 2amp B: [127022]
      automated match to d1lvod_
      complexed with i12

More info for Species Transmissible gastroenteritis virus [TaxId:11149] from b.47.1.4 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)

Timeline for Species Transmissible gastroenteritis virus [TaxId:11149] from b.47.1.4 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2):