SCOPe 2.07: Protein: Initiation factor eIF2 gamma subunit

Lineage for Protein: Initiation factor eIF2 gamma subunit

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.44: Elongation factor/aminomethyltransferase common domain [50464] (2 superfamilies)
barrel, closed; n=6, S=10; greek-key
Superfamily b.44.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465] (2 families)
probably related to the second domain and its superfamiy by a circular permutation
Family b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50466] (7 proteins)
Protein Initiation factor eIF2 gamma subunit [74964] (3 species)

Species:

Methanococcus jannaschii [TaxId:2190] [101789] (1 PDB entry)
- Domain for 1s0u:
  - Domain d1s0ua2: 1s0u A:348-437 [98303]
    Other proteins in same PDB: d1s0ua1, d1s0ua3, d1s0ua4
    structural genomics
    complexed with zn
Pyrococcus abyssi [TaxId:29292] [74965] (5 PDB entries)
1. Domain for 1kjz:
  - Domain d1kjza2: 1kjz A:322-410 [72629]
    Other proteins in same PDB: d1kjza1, d1kjza3
    complexed with zn; mutant
2. Domain for 1kk0:
  - Domain d1kk0a2: 1kk0 A:322-410 [72632]
    Other proteins in same PDB: d1kk0a1, d1kk0a3
    complexed with zn
3. Domain for 1kk1:
  - Domain d1kk1a2: 1kk1 A:322-410 [72635]
    Other proteins in same PDB: d1kk1a1, d1kk1a3
    complexed with gnp, mg, zn; mutant
4. Domain for 1kk2:
  - Domain d1kk2a2: 1kk2 A:322-410 [72638]
    Other proteins in same PDB: d1kk2a1, d1kk2a3
    complexed with gdp, mg, zn; mutant
5. Domain for 1kk3:
  - Domain d1kk3a2: 1kk3 A:322-410 [72641]
    Other proteins in same PDB: d1kk3a1, d1kk3a3
    complexed with gdp, mg, zn

Sulfolobus solfataricus [TaxId:2287] [141344] (10 PDB entries)
Uniprot Q980A5 321-415

Domain for 2aho:
- Domain d2ahoa2: 2aho A:321-415 [126768]
  Other proteins in same PDB: d2ahoa1, d2ahoa3, d2ahob1, d2ahob2, d2ahob3
  complexed with gnp, mg, zn
Domain for 2plf:
- Domain d2plfa2: 2plf A:321-415 [149626]
  Other proteins in same PDB: d2plfa1, d2plfa3
  automated match to d2ahoa2
Domains for 2pmd:
1. Domain d2pmda2: 2pmd A:321-415 [149664]
  Other proteins in same PDB: d2pmda1, d2pmda3, d2pmdb1, d2pmdb3
  automated match to d2qn6a2
  complexed with gdp, gnp, ppv
2. Domain d2pmdb2: 2pmd B:321-415 [149667]
  Other proteins in same PDB: d2pmda1, d2pmda3, d2pmdb1, d2pmdb3
  automated match to d2qn6a2
  complexed with gdp, gnp, ppv
Domain for 2qmu:
- Domain d2qmua2: 2qmu A:321-415 [150895]
  Other proteins in same PDB: d2qmua1, d2qmua3, d2qmub1, d2qmub2
  automatically matched to d2ahoa2
  complexed with gdp, po4, zn
Domain for 2qn6:
- Domain d2qn6a2: 2qn6 A:321-415 [150912]
  Other proteins in same PDB: d2qn6a1, d2qn6a3, d2qn6b_
  automated match to d2ahoa2
  complexed with gdp, mg
Domains for 3i1f:
1. Domain d3i1fa3: 3i1f A:321-415 [246642]
  Other proteins in same PDB: d3i1fa1, d3i1fa2, d3i1fb1, d3i1fb2
  automated match to d2qn6a2
  protein/RNA complex; complexed with gcp, po4
2. Domain d3i1fb3: 3i1f B:321-415 [246645]
  Other proteins in same PDB: d3i1fa1, d3i1fa2, d3i1fb1, d3i1fb2
  automated match to d2qn6a2
  protein/RNA complex; complexed with gcp, po4

Domains for 4m0l:

Domain d4m0la3: 4m0l A:321-415 [253710]
Other proteins in same PDB: d4m0la1, d4m0la2, d4m0lb1, d4m0lb2, d4m0lc1, d4m0lc2, d4m0ld1, d4m0ld2, d4m0le1, d4m0le2, d4m0lf1, d4m0lf2
automated match to d2qn6a2
protein/RNA complex; complexed with gdp, mg, po4

Domain d4m0lb3: 4m0l B:321-415 [253713]
Other proteins in same PDB: d4m0la1, d4m0la2, d4m0lb1, d4m0lb2, d4m0lc1, d4m0lc2, d4m0ld1, d4m0ld2, d4m0le1, d4m0le2, d4m0lf1, d4m0lf2
automated match to d2qn6a2
protein/RNA complex; complexed with gdp, mg, po4

Domain d4m0lc3: 4m0l C:321-415 [253716]
Other proteins in same PDB: d4m0la1, d4m0la2, d4m0lb1, d4m0lb2, d4m0lc1, d4m0lc2, d4m0ld1, d4m0ld2, d4m0le1, d4m0le2, d4m0lf1, d4m0lf2
automated match to d2qn6a2
protein/RNA complex; complexed with gdp, mg, po4

Domain d4m0ld3: 4m0l D:321-415 [253719]
Other proteins in same PDB: d4m0la1, d4m0la2, d4m0lb1, d4m0lb2, d4m0lc1, d4m0lc2, d4m0ld1, d4m0ld2, d4m0le1, d4m0le2, d4m0lf1, d4m0lf2
automated match to d2qn6a2
protein/RNA complex; complexed with gdp, mg, po4

Domain d4m0le3: 4m0l E:321-415 [253722]
Other proteins in same PDB: d4m0la1, d4m0la2, d4m0lb1, d4m0lb2, d4m0lc1, d4m0lc2, d4m0ld1, d4m0ld2, d4m0le1, d4m0le2, d4m0lf1, d4m0lf2
automated match to d2qn6a2
protein/RNA complex; complexed with gdp, mg, po4

Domain d4m0lf3: 4m0l F:321-415 [253725]
Other proteins in same PDB: d4m0la1, d4m0la2, d4m0lb1, d4m0lb2, d4m0lc1, d4m0lc2, d4m0ld1, d4m0ld2, d4m0le1, d4m0le2, d4m0lf1, d4m0lf2
automated match to d2qn6a2
protein/RNA complex; complexed with gdp, mg, po4

Domain for 4m2l:
- Domain d4m2la3: 4m2l A:321-415 [253737]
  Other proteins in same PDB: d4m2la1, d4m2la2
  automated match to d2qn6a2
  complexed with edo, po4, so4
Domain for 4m4s:
- Domain d4m4sa3: 4m4s A:321-415 [253748]
  Other proteins in same PDB: d4m4sa1, d4m4sa2
  automated match to d2qn6a2
  protein/RNA complex; complexed with fmt, gdp, mg, na
Domain for 4m53:
- Domain d4m53a3: 4m53 A:321-415 [253751]
  Other proteins in same PDB: d4m53a1, d4m53a2
  automated match to d2qn6a2
  protein/RNA complex; complexed with bme, fmt, gcp, mg, na

More info for Protein Initiation factor eIF2 gamma subunit from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain

Timeline for Protein Initiation factor eIF2 gamma subunit from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain:

Protein Initiation factor eIF2 gamma subunit from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain first appeared in SCOP 1.61
Protein Initiation factor eIF2 gamma subunit from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain appears in SCOPe 2.06
Protein Initiation factor eIF2 gamma subunit from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain appears in the current release, SCOPe 2.08