SCOPe 2.05: Domain d1ky3a_: 1ky3 A:

Lineage for d1ky3a_ (1ky3 A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (79 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein Rab-related protein ypt7p [75199] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [75200] (2 PDB entries)

8. Domain d1ky3a_: 1ky3 A: [73193]
   complexed with gdp, mg

Details for d1ky3a_

PDB Entry: 1ky3, 1.35 Å

PDB Description: gdp-bound ypt7p at 1.35 a resolution

PDB Compounds: (A:) GTP-binding protein ypt7p

SCOPe Domain Sequences for d1ky3a_:

Sequence, based on SEQRES records:

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
nilkviilgdsgvgktslmhryvndkysqqykatigadfltkevtvdgdkvatmqvwdta
gqerfqslgvafyrgadccvlvydvtnassfenikswrdeflvhanvnspetfpfvilgn
kidaeeskkivseksaqelakslgdiplfltsaknainvdtafeeiarsalqqnq

Sequence, based on observed residues (ATOM records):

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
nilkviilgdsgvgktslmhryvndkysqqyigadfltkevtvdgdkvatmqvwdtaafy
rgadccvlvydvtnassfenikswrdeflvhanvnspetfpfvilgnkidaeeskkivse
ksaqelakslgdiplfltsaknainvdtafeeiarsalqqnq

Timeline for d1ky3a_:

• d1ky3a_ first appeared in SCOP 1.61
  
• d1ky3a_ appears in SCOPe 2.04
  
• d1ky3a_ appears in SCOPe 2.06
  
• d1ky3a_ appears in the current release, SCOPe 2.08