SCOPe 2.04: Domain d1koua_: 1kou A:

Lineage for d1koua_ (1kou A:)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families)
   alpha-beta(2)-alpha(2)-beta(3)

5. Family d.110.3.1: PYP-like [55786] (3 proteins)

6. Protein Photoactive yellow protein, PYP [55787] (1 species)

7. Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (62 PDB entries)
   Uniprot P16113

8. Domain d1koua_: 1kou A: [72832]
   complexed with dhc, nbu

Details for d1koua_

PDB Entry: 1kou, 1.16 Å

PDB Description: crystal structure of the photoactive yellow protein reconstituted with caffeic acid at 1.16 a resolution

PDB Compounds: (A:) Photoactive yellow protein

SCOPe Domain Sequences for d1koua_:

Sequence, based on SEQRES records:

>d1koua_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkalsgdsywvfvk
rv

Sequence, based on observed residues (ATOM records):

>d1koua_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkaldsywvfvkrv

Timeline for d1koua_:

• d1koua_ first appeared in SCOP 1.61
  
• d1koua_ appears in SCOPe 2.03
  
• d1koua_ appears in SCOPe 2.05
  
• d1koua_ appears in the current release, SCOPe 2.08