Lineage for d1koua_ (1kou A:)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2970038Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2970344Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. 2970345Family d.110.3.1: PYP-like [55786] (3 proteins)
  6. 2970346Protein Photoactive yellow protein, PYP [55787] (1 species)
  7. 2970347Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (84 PDB entries)
    Uniprot P16113
  8. 2970366Domain d1koua_: 1kou A: [72832]
    complexed with dhc, nbu

Details for d1koua_

PDB Entry: 1kou (more details), 1.16 Å

PDB Description: crystal structure of the photoactive yellow protein reconstituted with caffeic acid at 1.16 a resolution
PDB Compounds: (A:) Photoactive yellow protein

SCOPe Domain Sequences for d1koua_:

Sequence, based on SEQRES records: (download)

>d1koua_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkalsgdsywvfvk
rv

Sequence, based on observed residues (ATOM records): (download)

>d1koua_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkaldsywvfvkrv

SCOPe Domain Coordinates for d1koua_:

Click to download the PDB-style file with coordinates for d1koua_.
(The format of our PDB-style files is described here.)

Timeline for d1koua_: