SCOPe 2.01: Domain d1ji1b3: 1ji1 B:123-554

Lineage for d1ji1b3 (1ji1 B:123-554)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein Maltogenic amylase, central domain [51465] (4 species)
   contains an additional N-terminal domain

7. Species Thermoactinomyces vulgaris, TVAI [TaxId:2026] [75061] (9 PDB entries)

8. Domain d1ji1b3: 1ji1 B:123-554 [71671]
   Other proteins in same PDB: d1ji1a1, d1ji1a2, d1ji1b1, d1ji1b2
   complexed with ca

Details for d1ji1b3

PDB Entry: 1ji1, 1.6 Å

PDB Description: Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1

PDB Compounds: (B:) alpha-amylase I

SCOPe Domain Sequences for d1ji1b3:

Sequence; same for both SEQRES and ATOM records:

>d1ji1b3 c.1.8.1 (B:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
nfktpdwlkngvmyqifpdrfyngdssndvqtgsytyngtptekkawgssvyadpgydns
lvffggdlagidqklgyikktlganilylnpifkaptnhkydtqdymavdpafgdnstlq
tlindihstangpkgylildgvfnhtgdshpwfdkynnfssqgayesqsspwynyytfyt
wpdsyasflgfnslpklnygnsgsavrgviynnsnsvaktylnppysvdgwrldaaqyvd
angnngsdvtnhqiwsefrnavkgvnsnaaiigeywgnanpwtaqgnqwdaatnfdgftq
pvsewitgkdyqnnsasisttqfdswlrgtranyptnvqqsmmnflsnhditrfatrsgg
dlwktylalifqmtyvgtptiyygdeygmqggadpdnrrsfdwsqatpsnsavaltqkli
tirnqypalrtg

Timeline for d1ji1b3:

• d1ji1b3 first appeared in SCOP 1.61
  
• d1ji1b3 appears in SCOP 1.75
  
• d1ji1b3 appears in SCOPe 2.02
  
• d1ji1b3 appears in the current release, SCOPe 2.08