SCOPe 2.08: Domain d1ir1a1: 1ir1 A:148-475

Lineage for d1ir1a1 (1ir1 A:148-475)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (14 species)

7. Species Spinach (Spinacia oleracea) [TaxId:3562] [51653] (11 PDB entries)

8. Domain d1ir1a1: 1ir1 A:148-475 [71282]
   Other proteins in same PDB: d1ir1a2, d1ir1b2, d1ir1c2, d1ir1d2, d1ir1s_, d1ir1t_, d1ir1u_, d1ir1v_
   complexed with cap, mg

Details for d1ir1a1

PDB Entry: 1ir1, 1.8 Å

PDB Description: Crystal Structure of Spinach Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) Complexed with CO2, Mg2+ and 2-Carboxyarabinitol-1,5-Bisphosphate

PDB Compounds: (A:) Large subunit of Rubisco

SCOPe Domain Sequences for d1ir1a1:

Sequence; same for both SEQRES and ATOM records:

>d1ir1a1 c.1.14.1 (A:148-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Spinach (Spinacia oleracea) [TaxId: 3562]}
fqgpphgiqverdklnkygrpllgctikpklglsaknygravyeclrggldftkddenvn
sqpfmrwrdrflfcaealykaqaetgeikghylnatagtcedmmkravfarelgvpivmh
dyltggftanttlshycrdnglllhihramhavidrqknhgmhfrvlakalrlsggdhih
sgtvvgklegerditlgfvdllrddytekdrsrgiyftqswvstpgvlpvasggihvwhm
palteifgddsvlqfgggtlghpwgnapgavanrvaleacvqarnegrdlaregntiire
atkwspelaaacevwkeikfefpamdtv

Timeline for d1ir1a1:

• d1ir1a1 first appeared in SCOP 1.61
  
• d1ir1a1 appears in SCOPe 2.07