SCOP 1.75: Domain d1gkpb2: 1gkp B:55-389

Lineage for d1gkpb2 (1gkp B:55-389)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (18 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.6: Hydantoinase (dihydropyrimidinase), catalytic domain [75073] (5 proteins)

6. Protein D-hydantoinase [75074] (4 species)

7. Species Thermus sp. [TaxId:275] [75075] (2 PDB entries)

8. Domain d1gkpb2: 1gkp B:55-389 [70234]
   Other proteins in same PDB: d1gkpa1, d1gkpb1, d1gkpc1, d1gkpd1, d1gkpe1, d1gkpf1

Details for d1gkpb2

PDB Entry: 1gkp, 1.29 Å

PDB Description: d-hydantoinase (dihydropyrimidinase) from thermus sp. in space group c2221

PDB Compounds: (B:) hydantoinase

SCOP Domain Sequences for d1gkpb2:

Sequence; same for both SEQRES and ATOM records:

>d1gkpb2 c.1.9.6 (B:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]}
fidphvhiylpfmatfakdthetgskaalmggtttyiemccpsrnddalegyqlwkskae
gnsycdytfhmavskfdektegqlreivadgissfkiflsyknffgvddgemyqtlrlak
elgvivtahcenaelvgrlqqkllsegktgpewhepsrpeaveaegtarfatflettgat
gyvvhlsckpaldaamaakargvpiyiesviphflldktyaerggveamkyimspplrdk
rnqkvlwdalaqgfidtvgtdhcpfdteqkllgkeaftaipngipaiedrvnllytygvs
rgrldihrfvdaastkaaklfglfprkgtiavgsd

Timeline for d1gkpb2:

• d1gkpb2 first appeared in SCOP 1.61
  
• d1gkpb2 appears in SCOP 1.73
  
• d1gkpb2 appears in SCOPe 2.01
  
• d1gkpb2 appears in the current release, SCOPe 2.08