SCOPe 2.08: Protein: Tyrosyl-DNA phosphodiesterase TDP1

Lineage for Protein: Tyrosyl-DNA phosphodiesterase TDP1

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.136: Phospholipase D/nuclease [56023] (1 superfamily)
beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234
Superfamily d.136.1: Phospholipase D/nuclease [56024] (6 families)
Family d.136.1.3: Tyrosyl-DNA phosphodiesterase TDP1 [69815] (2 proteins)
Protein Tyrosyl-DNA phosphodiesterase TDP1 [69816] (2 species)

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [111180] (1 PDB entry)
Uniprot P38319 79-538
- Domains for 1q32:
  1. Domain d1q32a1: 1q32 A:79-293 [104507]
  2. Domain d1q32a2: 1q32 A:302-538 [104508]
  3. Domain d1q32b1: 1q32 B:79-293 [104509]
  4. Domain d1q32b2: 1q32 B:302-538 [104510]
  5. Domain d1q32c1: 1q32 C:79-293 [104511]
  6. Domain d1q32c2: 1q32 C:302-538 [104512]
  7. Domain d1q32d1: 1q32 D:79-293 [104513]
  8. Domain d1q32d2: 1q32 D:302-538 [104514]
Human (Homo sapiens) [TaxId:9606] [69817] (36 PDB entries)
1. Domains for 1jy1:
  1. Domain d1jy1a1: 1jy1 A:149-350 [67438]
    Other proteins in same PDB: d1jy1a3
  2. Domain d1jy1a2: 1jy1 A:351-608 [67439]
    Other proteins in same PDB: d1jy1a3
2. Domains for 1mu7:
  1. Domain d1mu7a1: 1mu7 A:162-350 [79475]
    protein/DNA complex; complexed with gol, wo4
  2. Domain d1mu7a2: 1mu7 A:351-608 [79476]
    protein/DNA complex; complexed with gol, wo4
  3. Domain d1mu7b1: 1mu7 B:158-350 [79477]
    protein/DNA complex; complexed with gol, wo4
  4. Domain d1mu7b2: 1mu7 B:351-608 [79478]
    protein/DNA complex; complexed with gol, wo4
3. Domains for 1mu9:
  1. Domain d1mu9a1: 1mu9 A:162-350 [79479]
    protein/DNA complex; complexed with gol, vo4
  2. Domain d1mu9a2: 1mu9 A:351-608 [79480]
    protein/DNA complex; complexed with gol, vo4
  3. Domain d1mu9b1: 1mu9 B:159-350 [79481]
    protein/DNA complex; complexed with gol, vo4
  4. Domain d1mu9b2: 1mu9 B:351-608 [79482]
    protein/DNA complex; complexed with gol, vo4
4. Domains for 1nop:
  1. Domain d1nopa1: 1nop A:162-350 [85928]
    complexed with a topoisomerase I-derived peptide, chain C
    protein/DNA complex; complexed with vo4
  2. Domain d1nopa2: 1nop A:351-608 [85929]
    complexed with a topoisomerase I-derived peptide, chain C
    protein/DNA complex; complexed with vo4
  3. Domain d1nopb1: 1nop B:159-350 [85930]
    complexed with a topoisomerase I-derived peptide, chain C
    protein/DNA complex; complexed with vo4
  4. Domain d1nopb2: 1nop B:351-607 [85931]
    complexed with a topoisomerase I-derived peptide, chain C
    protein/DNA complex; complexed with vo4
5. Domains for 1qzq:
  1. Domain d1qzqa1: 1qzq A:161-350 [96655]
  2. Domain d1qzqa2: 1qzq A:351-608 [96656]
  3. Domain d1qzqb1: 1qzq B:161-350 [96657]
  4. Domain d1qzqb2: 1qzq B:351-608 [96658]
6. Domains for 1rff:
  1. Domain d1rffa1: 1rff A:162-350 [97376]
    protein/DNA complex; complexed with spm, vo4
  2. Domain d1rffa2: 1rff A:351-608 [97377]
    protein/DNA complex; complexed with spm, vo4
  3. Domain d1rffb1: 1rff B:162-350 [97378]
    protein/DNA complex; complexed with spm, vo4
  4. Domain d1rffb2: 1rff B:351-607 [97379]
    protein/DNA complex; complexed with spm, vo4
7. Domains for 1rfi:
  1. Domain d1rfia1: 1rfi A:162-350 [97380]
    protein/DNA complex; complexed with spm, vo4
  2. Domain d1rfia2: 1rfi A:351-608 [97381]
    protein/DNA complex; complexed with spm, vo4
  3. Domain d1rfib1: 1rfi B:162-350 [97382]
    protein/DNA complex; complexed with spm, vo4
  4. Domain d1rfib2: 1rfi B:351-607 [97383]
    protein/DNA complex; complexed with spm, vo4
8. Domains for 1rg1:
  1. Domain d1rg1a1: 1rg1 A:162-350 [97415]
    protein/DNA complex; complexed with ots, spm, vo4
  2. Domain d1rg1a2: 1rg1 A:351-608 [97416]
    protein/DNA complex; complexed with ots, spm, vo4
  3. Domain d1rg1b1: 1rg1 B:162-350 [97417]
    protein/DNA complex; complexed with ots, spm, vo4
  4. Domain d1rg1b2: 1rg1 B:351-607 [97418]
    protein/DNA complex; complexed with ots, spm, vo4
9. Domains for 1rg2:
  1. Domain d1rg2a1: 1rg2 A:162-350 [97419]
    protein/DNA complex; complexed with otr, ots, spm, vo4
  2. Domain d1rg2a2: 1rg2 A:351-608 [97420]
    protein/DNA complex; complexed with otr, ots, spm, vo4
  3. Domain d1rg2b1: 1rg2 B:159-350 [97421]
    protein/DNA complex; complexed with otr, ots, spm, vo4
  4. Domain d1rg2b2: 1rg2 B:351-608 [97422]
    protein/DNA complex; complexed with otr, ots, spm, vo4
10. Domains for 1rgt:
  1. Domain d1rgta1: 1rgt A:162-350 [97446]
    protein/DNA complex; complexed with otr, ots, spm, vo4
  2. Domain d1rgta2: 1rgt A:351-608 [97447]
    protein/DNA complex; complexed with otr, ots, spm, vo4
  3. Domain d1rgtb1: 1rgt B:162-350 [97448]
    protein/DNA complex; complexed with otr, ots, spm, vo4
  4. Domain d1rgtb2: 1rgt B:351-607 [97449]
    protein/DNA complex; complexed with otr, ots, spm, vo4
11. Domains for 1rgu:
  1. Domain d1rgua1: 1rgu A:162-350 [97450]
    protein/DNA complex; complexed with ots, spm, vo4
  2. Domain d1rgua2: 1rgu A:351-608 [97451]
    protein/DNA complex; complexed with ots, spm, vo4
  3. Domain d1rgub1: 1rgu B:162-350 [97452]
    protein/DNA complex; complexed with ots, spm, vo4
  4. Domain d1rgub2: 1rgu B:351-607 [97453]
    protein/DNA complex; complexed with ots, spm, vo4
12. Domains for 1rh0:
  1. Domain d1rh0a1: 1rh0 A:162-350 [97458]
    protein/DNA complex; complexed with ots, spm, vo4
  2. Domain d1rh0a2: 1rh0 A:351-608 [97459]
    protein/DNA complex; complexed with ots, spm, vo4
  3. Domain d1rh0b1: 1rh0 B:162-350 [97460]
    protein/DNA complex; complexed with ots, spm, vo4
  4. Domain d1rh0b2: 1rh0 B:351-607 [97461]
    protein/DNA complex; complexed with ots, spm, vo4
13. Domains for 6dhu:
  1. Domain d6dhua1: 6dhu A:162-350 [369269]
    automated match to d1qzqa1
    complexed with edo, ghm
  2. Domain d6dhua2: 6dhu A:351-607 [369270]
    automated match to d1qzqa2
    complexed with edo, ghm
  3. Domain d6dhub1: 6dhu B:162-350 [369327]
    automated match to d1qzqa1
    complexed with edo, ghm
  4. Domain d6dhub2: 6dhu B:351-607 [369328]
    automated match to d1qzqa2
    complexed with edo, ghm
14. Domains for 6die:
  1. Domain d6diea1: 6die A:162-350 [369325]
    automated match to d1qzqa1
    complexed with edo, ghm
  2. Domain d6diea2: 6die A:351-607 [369326]
    automated match to d1qzqa2
    complexed with edo, ghm
  3. Domain d6dieb1: 6die B:162-350 [369265]
    automated match to d1qzqa1
    complexed with edo, ghm
  4. Domain d6dieb2: 6die B:351-608 [369266]
    automated match to d1qzqa2
    complexed with edo, ghm
15. Domains for 6dih:
  1. Domain d6diha1: 6dih A:162-350 [369387]
    automated match to d1qzqa1
    complexed with edo, gjs
  2. Domain d6diha2: 6dih A:351-607 [369388]
    automated match to d1qzqa2
    complexed with edo, gjs
  3. Domain d6dihb1: 6dih B:162-350 [369263]
    automated match to d1qzqa1
    complexed with edo, gjs
  4. Domain d6dihb2: 6dih B:351-607 [369264]
    automated match to d1qzqa2
    complexed with edo, gjs
16. Domains for 6dim:
  1. Domain d6dima1: 6dim A:162-350 [369297]
    automated match to d1qzqa1
    complexed with edo, gjp
  2. Domain d6dima2: 6dim A:351-607 [369298]
    automated match to d1qzqa2
    complexed with edo, gjp
  3. Domain d6dimb1: 6dim B:162-350 [369258]
    automated match to d1qzqa1
    complexed with edo, gjp
  4. Domain d6dimb2: 6dim B:351-607 [369259]
    automated match to d1qzqa2
    complexed with edo, gjp
17. Domains for 6djd:
  1. Domain d6djda1: 6djd A:162-350 [369267]
    automated match to d1qzqa1
    complexed with edo, gjp
  2. Domain d6djda2: 6djd A:351-607 [369268]
    automated match to d1qzqa2
    complexed with edo, gjp
  3. Domain d6djdb1: 6djd B:162-350 [369442]
    automated match to d1qzqa1
    complexed with edo, gjp
  4. Domain d6djdb2: 6djd B:351-607 [369443]
    automated match to d1qzqa2
    complexed with edo, gjp
18. Domains for 6dje:
  1. Domain d6djea1: 6dje A:162-350 [369413]
    automated match to d1qzqa1
    complexed with edo, gny
  2. Domain d6djea2: 6dje A:351-607 [369414]
    automated match to d1qzqa2
    complexed with edo, gny
  3. Domain d6djeb1: 6dje B:162-350 [369457]
    automated match to d1qzqa1
    complexed with edo, gny
  4. Domain d6djeb2: 6dje B:351-607 [369458]
    automated match to d1qzqa2
    complexed with edo, gny
19. Domains for 6djf:
  1. Domain d6djfa1: 6djf A:162-350 [369303]
    automated match to d1qzqa1
    complexed with edo, gnv
  2. Domain d6djfa2: 6djf A:351-607 [369304]
    automated match to d1qzqa2
    complexed with edo, gnv
  3. Domain d6djfb1: 6djf B:162-350 [369257]
    automated match to d1qzqa1
    complexed with edo, gnv
  4. Domain d6djfb2: 6djf B:351-607 [369260]
    automated match to d1qzqa2
    complexed with edo, gnv
20. Domains for 6djg:
  1. Domain d6djga1: 6djg A:162-350 [369261]
    automated match to d1qzqa1
    complexed with edo, gnj
  2. Domain d6djga2: 6djg A:351-607 [369262]
    automated match to d1qzqa2
    complexed with edo, gnj
  3. Domain d6djgb1: 6djg B:162-350 [369300]
    automated match to d1qzqa1
    complexed with edo, gnj
  4. Domain d6djgb2: 6djg B:351-607 [369301]
    automated match to d1qzqa2
    complexed with edo, gnj
21. Domains for 6djh:
  1. Domain d6djha1: 6djh A:162-350 [369459]
    automated match to d1qzqa1
    complexed with edo, gnm
  2. Domain d6djha2: 6djh A:351-607 [369460]
    automated match to d1qzqa2
    complexed with edo, gnm
  3. Domain d6djhb1: 6djh B:162-350 [369455]
    automated match to d1qzqa1
    complexed with edo, gnm
  4. Domain d6djhb2: 6djh B:351-607 [369456]
    automated match to d1qzqa2
    complexed with edo, gnm
22. Domains for 6dji:
  1. Domain d6djia1: 6dji A:162-350 [369411]
    automated match to d1qzqa1
    complexed with edo, gog
  2. Domain d6djia2: 6dji A:351-607 [369412]
    automated match to d1qzqa2
    complexed with edo, gog
  3. Domain d6djib1: 6dji B:162-350 [369361]
    automated match to d1qzqa1
    complexed with edo, gog
  4. Domain d6djib2: 6dji B:351-607 [369362]
    automated match to d1qzqa2
    complexed with edo, gog
23. Domains for 6djj:
  1. Domain d6djja1: 6djj A:162-350 [369439]
    automated match to d1qzqa1
    complexed with edo, gm7
  2. Domain d6djja2: 6djj A:351-607 [369440]
    automated match to d1qzqa2
    complexed with edo, gm7
  3. Domain d6djjb1: 6djj B:162-350 [369364]
    automated match to d1qzqa1
    complexed with edo, gm7
  4. Domain d6djjb2: 6djj B:351-607 [369365]
    automated match to d1qzqa2
    complexed with edo, gm7
24. Domains for 6mj5:
  1. Domain d6mj5a1: 6mj5 A:162-350 [370613]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, jta
  2. Domain d6mj5a2: 6mj5 A:351-607 [370614]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, jta
  3. Domain d6mj5b1: 6mj5 B:162-350 [370628]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, jta
  4. Domain d6mj5b2: 6mj5 B:351-607 [370629]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, jta
25. Domains for 6myz:
  1. Domain d6myza1: 6myz A:162-350 [376439]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k7d
  2. Domain d6myza2: 6myz A:351-607 [376440]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k7d
  3. Domain d6myzb1: 6myz B:162-350 [376489]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k7d
  4. Domain d6myzb2: 6myz B:351-607 [376490]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k7d
26. Domains for 6mz0:
  1. Domain d6mz0a1: 6mz0 A:162-350 [376460]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k7a
  2. Domain d6mz0a2: 6mz0 A:351-607 [376461]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k7a
  3. Domain d6mz0b1: 6mz0 B:162-350 [376473]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k7a
  4. Domain d6mz0b2: 6mz0 B:351-607 [376474]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k7a
27. Domains for 6n0d:
  1. Domain d6n0da1: 6n0d A:162-350 [376727]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k8j
  2. Domain d6n0da2: 6n0d A:351-607 [376728]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k8j
  3. Domain d6n0db1: 6n0d B:162-350 [376732]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k8j
  4. Domain d6n0db2: 6n0d B:351-607 [376733]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k8j
28. Domains for 6n0n:
  1. Domain d6n0na1: 6n0n A:162-350 [376725]
    automated match to d1qzqa1
    protein/DNA complex; complexed with dms, edo, kay
  2. Domain d6n0na2: 6n0n A:351-607 [376726]
    automated match to d1qzqa2
    protein/DNA complex; complexed with dms, edo, kay
  3. Domain d6n0nb1: 6n0n B:162-350 [376745]
    automated match to d1qzqa1
    protein/DNA complex; complexed with dms, edo, kay
  4. Domain d6n0nb2: 6n0n B:351-607 [376746]
    automated match to d1qzqa2
    protein/DNA complex; complexed with dms, edo, kay
29. Domains for 6n0o:
  1. Domain d6n0oa1: 6n0o A:162-350 [376741]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k8g
  2. Domain d6n0oa2: 6n0o A:351-607 [376742]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k8g
  3. Domain d6n0ob1: 6n0o B:162-350 [376760]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k8g
  4. Domain d6n0ob2: 6n0o B:351-607 [376761]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k8g
30. Domains for 6n0r:
  1. Domain d6n0ra1: 6n0r A:162-350 [376767]
    automated match to d1qzqa1
    protein/DNA complex; complexed with dms, edo, k8d
  2. Domain d6n0ra2: 6n0r A:351-607 [376768]
    automated match to d1qzqa2
    protein/DNA complex; complexed with dms, edo, k8d
  3. Domain d6n0rb1: 6n0r B:162-350 [376753]
    automated match to d1qzqa1
    protein/DNA complex; complexed with dms, edo, k8d
  4. Domain d6n0rb2: 6n0r B:351-607 [376754]
    automated match to d1qzqa2
    protein/DNA complex; complexed with dms, edo, k8d
31. Domains for 6n17:
  1. Domain d6n17a1: 6n17 A:162-350 [370663]
    automated match to d1qzqa1
    protein/DNA complex; complexed with dms, edo, k8y
  2. Domain d6n17a2: 6n17 A:351-607 [370664]
    automated match to d1qzqa2
    protein/DNA complex; complexed with dms, edo, k8y
  3. Domain d6n17b1: 6n17 B:162-350 [370651]
    automated match to d1qzqa1
    protein/DNA complex; complexed with dms, edo, k8y
  4. Domain d6n17b2: 6n17 B:351-607 [370652]
    automated match to d1qzqa2
    protein/DNA complex; complexed with dms, edo, k8y
32. Domains for 6n19:
  1. Domain d6n19a1: 6n19 A:162-350 [370703]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k8v
  2. Domain d6n19a2: 6n19 A:351-607 [370704]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k8v
  3. Domain d6n19b1: 6n19 B:162-350 [370690]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, k8v
  4. Domain d6n19b2: 6n19 B:351-607 [370691]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, k8v
33. Domains for 6w4r:
  1. Domain d6w4ra1: 6w4r A:162-350 [402662]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, mpo, szv
  2. Domain d6w4ra2: 6w4r A:351-607 [402663]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, mpo, szv
  3. Domain d6w4rb1: 6w4r B:162-350 [402645]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, mpo, szv
  4. Domain d6w4rb2: 6w4r B:351-607 [402646]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, mpo, szv
34. Domains for 6w7j:
  1. Domain d6w7ja1: 6w7j A:162-350 [402632]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, tgm
  2. Domain d6w7ja2: 6w7j A:351-607 [402633]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, tgm
  3. Domain d6w7jb1: 6w7j B:162-350 [402636]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, tgm
  4. Domain d6w7jb2: 6w7j B:351-607 [402637]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, tgm
35. Domains for 6w7k:
  1. Domain d6w7ka1: 6w7k A:162-350 [402665]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, tg7
  2. Domain d6w7ka2: 6w7k A:351-607 [402666]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, tg7
  3. Domain d6w7kb1: 6w7k B:162-350 [402658]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, tg7
  4. Domain d6w7kb2: 6w7k B:351-607 [402659]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, tg7
36. Domains for 6w7l:
  1. Domain d6w7la1: 6w7l A:162-350 [402648]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, tgv
  2. Domain d6w7la2: 6w7l A:351-607 [402649]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, tgv
  3. Domain d6w7lb1: 6w7l B:162-350 [402697]
    automated match to d1qzqa1
    protein/DNA complex; complexed with edo, tgv
  4. Domain d6w7lb2: 6w7l B:351-607 [402698]
    automated match to d1qzqa2
    protein/DNA complex; complexed with edo, tgv

More info for Protein Tyrosyl-DNA phosphodiesterase TDP1 from d.136.1.3: Tyrosyl-DNA phosphodiesterase TDP1

Timeline for Protein Tyrosyl-DNA phosphodiesterase TDP1 from d.136.1.3: Tyrosyl-DNA phosphodiesterase TDP1:

Protein Tyrosyl-DNA phosphodiesterase TDP1 from d.136.1.3: Tyrosyl-DNA phosphodiesterase TDP1 first appeared in SCOP 1.59
Protein Tyrosyl-DNA phosphodiesterase TDP1 from d.136.1.3: Tyrosyl-DNA phosphodiesterase TDP1 appears in SCOPe 2.07