SCOPe 2.06: Species: Escherichia coli [TaxId: 562]

Lineage for Species: Escherichia coli [TaxId: 562]

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest

Superfamily d.79.5: IpsF-like [69765] (2 families)

forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)

Family d.79.5.1: IpsF-like [69766] (3 proteins)
automatically mapped to Pfam PF02542
Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF [69767] (6 species)
Species Escherichia coli [TaxId:562] [69768] (14 PDB entries)
Uniprot P62617 ! Uniprot P36663

PDB entries in Species: Escherichia coli [TaxId: 562]:

Domain(s) for 1gx1:
1. Domain d1gx1a1: 1gx1 A:1-156 [70675]
  Other proteins in same PDB: d1gx1a2, d1gx1b2, d1gx1c2
  complexed with cdp, mn, so4, zn
2. Domain d1gx1b1: 1gx1 B:1-156 [70676]
  Other proteins in same PDB: d1gx1a2, d1gx1b2, d1gx1c2
  complexed with cdp, mn, so4, zn
3. Domain d1gx1c1: 1gx1 C:1-156 [70677]
  Other proteins in same PDB: d1gx1a2, d1gx1b2, d1gx1c2
  complexed with cdp, mn, so4, zn
Domain(s) for 1h47:
1. Domain d1h47a1: 1h47 A:1-156 [111615]
  Other proteins in same PDB: d1h47a2, d1h47b2, d1h47c2, d1h47d2, d1h47e2, d1h47f2
  complexed with c5p, gpp, zn
2. Domain d1h47b1: 1h47 B:1-156 [111616]
  Other proteins in same PDB: d1h47a2, d1h47b2, d1h47c2, d1h47d2, d1h47e2, d1h47f2
  complexed with c5p, gpp, zn
3. Domain d1h47c1: 1h47 C:1-156 [111617]
  Other proteins in same PDB: d1h47a2, d1h47b2, d1h47c2, d1h47d2, d1h47e2, d1h47f2
  complexed with c5p, gpp, zn
4. Domain d1h47d1: 1h47 D:1-156 [111618]
  Other proteins in same PDB: d1h47a2, d1h47b2, d1h47c2, d1h47d2, d1h47e2, d1h47f2
  complexed with c5p, gpp, zn
5. Domain d1h47e1: 1h47 E:1-156 [111619]
  Other proteins in same PDB: d1h47a2, d1h47b2, d1h47c2, d1h47d2, d1h47e2, d1h47f2
  complexed with c5p, gpp, zn
6. Domain d1h47f1: 1h47 F:1-156 [111620]
  Other proteins in same PDB: d1h47a2, d1h47b2, d1h47c2, d1h47d2, d1h47e2, d1h47f2
  complexed with c5p, gpp, zn
Domain(s) for 1h48:
1. Domain d1h48a1: 1h48 A:1-156 [111621]
  Other proteins in same PDB: d1h48a2, d1h48b2, d1h48c2, d1h48d2, d1h48e2, d1h48f2
  complexed with c5p, cdi, gpp, mn, zn
2. Domain d1h48b1: 1h48 B:1-156 [111622]
  Other proteins in same PDB: d1h48a2, d1h48b2, d1h48c2, d1h48d2, d1h48e2, d1h48f2
  complexed with c5p, cdi, gpp, mn, zn
3. Domain d1h48c1: 1h48 C:1-157 [111623]
  Other proteins in same PDB: d1h48a2, d1h48b2, d1h48c2, d1h48d2, d1h48e2, d1h48f2
  complexed with c5p, cdi, gpp, mn, zn
4. Domain d1h48d1: 1h48 D:1-156 [111624]
  Other proteins in same PDB: d1h48a2, d1h48b2, d1h48c2, d1h48d2, d1h48e2, d1h48f2
  complexed with c5p, cdi, gpp, mn, zn
5. Domain d1h48e1: 1h48 E:1-156 [111625]
  Other proteins in same PDB: d1h48a2, d1h48b2, d1h48c2, d1h48d2, d1h48e2, d1h48f2
  complexed with c5p, cdi, gpp, mn, zn
6. Domain d1h48f1: 1h48 F:1-157 [111626]
  Other proteins in same PDB: d1h48a2, d1h48b2, d1h48c2, d1h48d2, d1h48e2, d1h48f2
  complexed with c5p, cdi, gpp, mn, zn
Domain(s) for 1jy8:
- Domain d1jy8a_: 1jy8 A: [67452]
  complexed with c5p, cdi, zn
Domain(s) for 1knj:
- Domain d1knja_: 1knj A: [72778]
  complexed with c5p, cdi, mn
Domain(s) for 1knk:
- Domain d1knka_: 1knk A: [72779]
  complexed with mn
Domain(s) for 1u3l:
- Domain d1u3la_: 1u3l A: [107643]
  complexed with cdp, mg, zn
Domain(s) for 1u3p:
- Domain d1u3pa_: 1u3p A: [107644]
  complexed with zn
Domain(s) for 1u40:
- Domain d1u40a_: 1u40 A: [107647]
  complexed with cdm, zn
Domain(s) for 1u43:
- Domain d1u43a_: 1u43 A: [107653]
  complexed with sud
Domain(s) for 1yqn:
- Domain d1yqna1: 1yqn A:1-156 [241057]
  Other proteins in same PDB: d1yqna2
  automated match to d3esja_
  complexed with cdp, gpp, mn, zn; mutant
Domain(s) for 2amt:
1. Domain d2amta_: 2amt A: [162834]
  automated match to d1h48c_
  complexed with 1aa, gpp, zn
2. Domain d2amtb_: 2amt B: [162835]
  automated match to d1h48c_
  complexed with 1aa, gpp, zn
3. Domain d2amtc_: 2amt C: [162836]
  automated match to d1h48c_
  complexed with 1aa, gpp, zn
4. Domain d2amtd_: 2amt D: [162837]
  automated match to d1h48c_
  complexed with 1aa, gpp, zn
5. Domain d2amte_: 2amt E: [162838]
  automated match to d1h48c_
  complexed with 1aa, gpp, zn
6. Domain d2amtf_: 2amt F: [162839]
  automated match to d1h48c_
  complexed with 1aa, gpp, zn
Domain(s) for 2ao4:
- Domain d2ao4a1: 2ao4 A:1-157 [303516]
  Other proteins in same PDB: d2ao4a2
  automated match to d1h48c_
  complexed with 2aa, gpp, zn
Domain(s) for 2gzl:
- Domain d2gzla2: 2gzl A:1-157 [135909]
  Other proteins in same PDB: d2gzla3
  automated match to d1h48c_
  complexed with 2aa, gpp, zn

More info for Species Escherichia coli [TaxId:562] from d.79.5.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF

Timeline for Species Escherichia coli [TaxId:562] from d.79.5.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF:

Species Escherichia coli [TaxId:562] from d.79.5.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF first appeared in SCOP 1.59
Species Escherichia coli [TaxId:562] from d.79.5.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF appears in SCOPe 2.05
Species Escherichia coli [TaxId:562] from d.79.5.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF appears in SCOPe 2.07
Species Escherichia coli [TaxId:562] from d.79.5.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF appears in the current release, SCOPe 2.08