Lineage for Protein: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1657490Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 1658211Superfamily d.79.5: IpsF-like [69765] (2 families) (S)
    forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 1658212Family d.79.5.1: IpsF-like [69766] (3 proteins)
    automatically mapped to Pfam PF02542
  6. 1658213Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF [69767] (6 species)

Species:

  1. 1658214Escherichia coli K-12 [TaxId:83333] [188969] (5 PDB entries)
    1. Domains for 3elc:
      1. 1658221Domain d3elca_: 3elc A: [175052]
        automated match to d1h48c_
        complexed with f01, gpp, zn
      2. 1658222Domain d3elcb_: 3elc B: [175053]
        automated match to d1h48c_
        complexed with f01, gpp, zn
      3. 1658223Domain d3elcc_: 3elc C: [175054]
        automated match to d1h48c_
        complexed with f01, gpp, zn
    2. Domain for 3eor:
    3. Domains for 3ern:
      1. 1658215Domain d3erna_: 3ern A: [175168]
        automated match to d1h48c_
        complexed with car, gpp, so4, zn
      2. 1658216Domain d3ernb_: 3ern B: [175169]
        automated match to d1h48c_
        complexed with car, gpp, so4, zn
      3. 1658217Domain d3ernc_: 3ern C: [175170]
        automated match to d1h48c_
        complexed with car, gpp, so4, zn
      4. 1658218Domain d3ernd_: 3ern D: [175171]
        automated match to d1h48c_
        complexed with car, gpp, so4, zn
      5. 1658219Domain d3erne_: 3ern E: [175172]
        automated match to d1h48c_
        complexed with car, gpp, so4, zn
      6. 1658220Domain d3ernf_: 3ern F: [175173]
        automated match to d1h48c_
        complexed with car, gpp, so4, zn
    4. Domain for 3esj:
    5. Domain for 3fba:
  2. 1658227Escherichia coli [TaxId:562] [69768] (13 PDB entries)
    Uniprot P62617 ! Uniprot P36663
    1. Domains for 1gx1:
      1. 1658228Domain d1gx1a_: 1gx1 A: [70675]
        complexed with cdp, mn, so4, zn
      2. 1658229Domain d1gx1b_: 1gx1 B: [70676]
        complexed with cdp, mn, so4, zn
      3. 1658230Domain d1gx1c_: 1gx1 C: [70677]
        complexed with cdp, mn, so4, zn
    2. Domains for 1h47:
      1. 1658231Domain d1h47a_: 1h47 A: [111615]
        complexed with c5p, gpp, zn
      2. 1658232Domain d1h47b_: 1h47 B: [111616]
        complexed with c5p, gpp, zn
      3. 1658233Domain d1h47c_: 1h47 C: [111617]
        complexed with c5p, gpp, zn
      4. 1658234Domain d1h47d_: 1h47 D: [111618]
        complexed with c5p, gpp, zn
      5. 1658235Domain d1h47e_: 1h47 E: [111619]
        complexed with c5p, gpp, zn
      6. 1658236Domain d1h47f_: 1h47 F: [111620]
        complexed with c5p, gpp, zn
    3. Domains for 1h48:
      1. 1658237Domain d1h48a_: 1h48 A: [111621]
        complexed with c5p, cdi, gpp, mn, zn
      2. 1658238Domain d1h48b_: 1h48 B: [111622]
        complexed with c5p, cdi, gpp, mn, zn
      3. 1658239Domain d1h48c_: 1h48 C: [111623]
        complexed with c5p, cdi, gpp, mn, zn
      4. 1658240Domain d1h48d_: 1h48 D: [111624]
        complexed with c5p, cdi, gpp, mn, zn
      5. 1658241Domain d1h48e_: 1h48 E: [111625]
        complexed with c5p, cdi, gpp, mn, zn
      6. 1658242Domain d1h48f_: 1h48 F: [111626]
        complexed with c5p, cdi, gpp, mn, zn
    4. Domain for 1jy8:
    5. Domain for 1knj:
    6. Domain for 1knk:
    7. Domain for 1u3l:
    8. Domain for 1u3p:
    9. Domain for 1u40:
    10. Domain for 1u43:
    11. Domain for 1yqn:
    12. Domains for 2amt:
      1. 1658243Domain d2amta_: 2amt A: [162834]
        automated match to d1h48c_
        complexed with 1aa, gpp, zn
      2. 1658244Domain d2amtb_: 2amt B: [162835]
        automated match to d1h48c_
        complexed with 1aa, gpp, zn
      3. 1658245Domain d2amtc_: 2amt C: [162836]
        automated match to d1h48c_
        complexed with 1aa, gpp, zn
      4. 1658246Domain d2amtd_: 2amt D: [162837]
        automated match to d1h48c_
        complexed with 1aa, gpp, zn
      5. 1658247Domain d2amte_: 2amt E: [162838]
        automated match to d1h48c_
        complexed with 1aa, gpp, zn
      6. 1658248Domain d2amtf_: 2amt F: [162839]
        automated match to d1h48c_
        complexed with 1aa, gpp, zn
    13. Domain for 2gzl:
  3. 1658258Haemophilus influenzae [TaxId:727] [75479] (3 PDB entries)
    1. Domains for 1jn1:
      1. 1658271Domain d1jn1a_: 1jn1 A: [71754]
        structural genomics
        complexed with co, so4
      2. 1658272Domain d1jn1b_: 1jn1 B: [71755]
        structural genomics
        complexed with co, so4
      3. 1658273Domain d1jn1c_: 1jn1 C: [71756]
        structural genomics
        complexed with co, so4
    2. Domains for 1vh8:
      1. 1658259Domain d1vh8a_: 1vh8 A: [100647]
        structural genomics
        complexed with acy, pop
      2. 1658260Domain d1vh8b_: 1vh8 B: [100648]
        structural genomics
        complexed with acy, pop
      3. 1658261Domain d1vh8c_: 1vh8 C: [100649]
        structural genomics
        complexed with acy, pop
      4. 1658262Domain d1vh8d_: 1vh8 D: [100650]
        structural genomics
        complexed with acy, pop
      5. 1658263Domain d1vh8e_: 1vh8 E: [100651]
        structural genomics
        complexed with acy, pop
      6. 1658264Domain d1vh8f_: 1vh8 F: [100652]
        structural genomics
        complexed with acy, pop
    3. Domains for 1vha:
      1. 1658265Domain d1vhaa_: 1vha A: [100655]
        structural genomics
        complexed with acy, mn, pop
      2. 1658266Domain d1vhab_: 1vha B: [100656]
        structural genomics
        complexed with acy, mn, pop
      3. 1658267Domain d1vhac_: 1vha C: [100657]
        structural genomics
        complexed with acy, mn, pop
      4. 1658268Domain d1vhad_: 1vha D: [100658]
        structural genomics
        complexed with acy, mn, pop
      5. 1658269Domain d1vhae_: 1vha E: [100659]
        structural genomics
        complexed with acy, mn, pop
      6. 1658270Domain d1vhaf_: 1vha F: [100660]
        structural genomics
        complexed with acy, mn, pop
  4. 1658274Shewanella oneidensis [TaxId:70863] [118026] (1 PDB entry)
    Uniprot Q8EBR3
  5. 1658278Thale cress (Arabidopsis thaliana) [TaxId:3702] [187992] (1 PDB entry)
  6. 1658280Thermus thermophilus [TaxId:274] [82720] (4 PDB entries)
    1. Domains for 1iv1:
      1. 1658299Domain d1iv1a_: 1iv1 A: [76816]
      2. 1658300Domain d1iv1b_: 1iv1 B: [76817]
      3. 1658301Domain d1iv1c_: 1iv1 C: [76818]
      4. 1658302Domain d1iv1d_: 1iv1 D: [76819]
      5. 1658303Domain d1iv1e_: 1iv1 E: [76820]
      6. 1658304Domain d1iv1f_: 1iv1 F: [76821]
    2. Domains for 1iv2:
      1. 1658287Domain d1iv2a_: 1iv2 A: [76822]
        complexed with cdp, mg
      2. 1658288Domain d1iv2b_: 1iv2 B: [76823]
        complexed with cdp, mg
      3. 1658289Domain d1iv2c_: 1iv2 C: [76824]
        complexed with cdp, mg
      4. 1658290Domain d1iv2d_: 1iv2 D: [76825]
        complexed with cdp, mg
      5. 1658291Domain d1iv2e_: 1iv2 E: [76826]
        complexed with cdp, mg
      6. 1658292Domain d1iv2f_: 1iv2 F: [76827]
        complexed with cdp, mg
    3. Domains for 1iv3:
      1. 1658281Domain d1iv3a_: 1iv3 A: [76828]
        complexed with mg
      2. 1658282Domain d1iv3b_: 1iv3 B: [76829]
        complexed with mg
      3. 1658283Domain d1iv3c_: 1iv3 C: [76830]
        complexed with mg
      4. 1658284Domain d1iv3d_: 1iv3 D: [76831]
        complexed with mg
      5. 1658285Domain d1iv3e_: 1iv3 E: [76832]
        complexed with mg
      6. 1658286Domain d1iv3f_: 1iv3 F: [76833]
        complexed with mg
    4. Domains for 1iv4:
      1. 1658293Domain d1iv4a_: 1iv4 A: [76834]
        complexed with c5p, mg
      2. 1658294Domain d1iv4b_: 1iv4 B: [76835]
        complexed with c5p, mg
      3. 1658295Domain d1iv4c_: 1iv4 C: [76836]
        complexed with c5p, mg
      4. 1658296Domain d1iv4d_: 1iv4 D: [76837]
        complexed with c5p, mg
      5. 1658297Domain d1iv4e_: 1iv4 E: [76838]
        complexed with c5p, mg
      6. 1658298Domain d1iv4f_: 1iv4 F: [76839]
        complexed with c5p, mg

More info for Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: IpsF-like

Timeline for Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: IpsF-like: