SCOPe 2.06: Protein: Pseudouridine synthase II TruB

Lineage for Protein: Pseudouridine synthase II TruB

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.265: Pseudouridine synthase [100877] (1 superfamily)
consists of two alpha+beta subdomains with some similarity to the ferredoxin-like fold
Superfamily d.265.1: Pseudouridine synthase [55120] (5 families)
the active site is the most conserved structural region of the superfamily and is located between the subdomains
Family d.265.1.2: Pseudouridine synthase II TruB [69746] (2 proteins)
contains C-terminal PUA domain
Protein Pseudouridine synthase II TruB [69747] (5 species)

Species:

Escherichia coli [TaxId:562] [69748] (3 PDB entries)
1. Domain for 1k8w:
  - Domain d1k8wa5: 1k8w A:10-250 [90388]
    Other proteins in same PDB: d1k8wa3, d1k8wa6
    protein/RNA complex; complexed with so4
2. Domain for 1r3f:
  - Domain d1r3fa2: 1r3f A:8-250 [96910]
    Other proteins in same PDB: d1r3fa1
    protein/RNA complex
3. Domain for 1zl3:
  - Domain d1zl3a2: 1zl3 A:10-250 [125236]
    Other proteins in same PDB: d1zl3a1, d1zl3a3
    automated match to d1r3fa2
    protein/RNA complex; complexed with so4
Methanococcus jannaschii [TaxId:2190] [143435] (1 PDB entry)
Uniprot Q57612 17-246
- Domain for 2apo:
  - Domain d2apoa2: 2apo A:17-246 [127134]
    Other proteins in same PDB: d2apoa1, d2apob_
    protein/RNA complex; complexed with k, zn
Mycobacterium tuberculosis [TaxId:1773] [103017] (2 PDB entries)
1. Domains for 1s71:
  1. Domain d1s71a1: 1s71 A:3-235 [303043]
    Other proteins in same PDB: d1s71a2, d1s71b2
    automated match to d1sgva2
  2. Domain d1s71b1: 1s71 B:1-235 [303045]
    Other proteins in same PDB: d1s71a2, d1s71b2
    automated match to d1sgvb2
2. Domains for 1sgv:
  1. Domain d1sgva2: 1sgv A:3-235 [98859]
    Other proteins in same PDB: d1sgva1, d1sgvb1
  2. Domain d1sgvb2: 1sgv B:1-235 [98861]
    Other proteins in same PDB: d1sgva1, d1sgvb1
Pyrococcus furiosus [TaxId:2261] [143434] (2 PDB entries)
Uniprot Q7LWY0 5-249
1. Domains for 2ey4:
  1. Domain d2ey4a2: 2ey4 A:8-252 [132579]
    Other proteins in same PDB: d2ey4a1, d2ey4b1, d2ey4c1, d2ey4d_, d2ey4e1, d2ey4f_
    complexed with zn
  2. Domain d2ey4b2: 2ey4 B:11-252 [132581]
    Other proteins in same PDB: d2ey4a1, d2ey4b1, d2ey4c1, d2ey4d_, d2ey4e1, d2ey4f_
    automated match to d2ey4a2
    complexed with zn
2. Domain for 2hvy:
  - Domain d2hvya2: 2hvy A:11-252 [136818]
    Other proteins in same PDB: d2hvya1, d2hvyb1, d2hvyc1, d2hvyd1
    automatically matched to 2EY4 A:8-252
    protein/RNA complex; complexed with atp, zn
Thermotoga maritima [TaxId:2336] [103016] (4 PDB entries)
1. Domain for 1r3e:
  - Domain d1r3ea2: 1r3e A:10-237 [96908]
    Other proteins in same PDB: d1r3ea1
    protein/RNA complex
2. Domains for 1ze1:
  1. Domain d1ze1a2: 1ze1 A:1-228 [124963]
    Other proteins in same PDB: d1ze1a1, d1ze1b1, d1ze1c1, d1ze1d1
    automated match to d1r3ea2
    complexed with mg
  2. Domain d1ze1b2: 1ze1 B:1-228 [124965]
    Other proteins in same PDB: d1ze1a1, d1ze1b1, d1ze1c1, d1ze1d1
    automated match to d1r3ea2
    complexed with mg
  3. Domain d1ze1c2: 1ze1 C:1-228 [124967]
    Other proteins in same PDB: d1ze1a1, d1ze1b1, d1ze1c1, d1ze1d1
    automated match to d1r3ea2
    complexed with mg
  4. Domain d1ze1d2: 1ze1 D:1-228 [124969]
    Other proteins in same PDB: d1ze1a1, d1ze1b1, d1ze1c1, d1ze1d1
    automated match to d1r3ea2
    complexed with mg
3. Domains for 1ze2:
  1. Domain d1ze2a2: 1ze2 A:1-228 [124971]
    Other proteins in same PDB: d1ze2a1, d1ze2b1
    automated match to d1r3ea2
    protein/RNA complex
  2. Domain d1ze2b2: 1ze2 B:1-228 [124973]
    Other proteins in same PDB: d1ze2a1, d1ze2b1
    automatically matched to d1r3ea2
    protein/RNA complex
4. Domain for 2ab4:
  - Domain d2ab4a2: 2ab4 A:1-228 [126506]
    Other proteins in same PDB: d2ab4a1
    protein/RNA complex; complexed with zn

More info for Protein Pseudouridine synthase II TruB from d.265.1.2: Pseudouridine synthase II TruB

Timeline for Protein Pseudouridine synthase II TruB from d.265.1.2: Pseudouridine synthase II TruB:

Protein Pseudouridine synthase II TruB from d.265.1.2: Pseudouridine synthase II TruB first appeared in SCOP 1.59, called Protein Pseudouridine synthase II TruB from d.58.35.2: Pseudouridine synthase II TruB
Protein Pseudouridine synthase II TruB from d.265.1.2: Pseudouridine synthase II TruB appears in SCOPe 2.05
Protein Pseudouridine synthase II TruB from d.265.1.2: Pseudouridine synthase II TruB appears in SCOPe 2.07
Protein Pseudouridine synthase II TruB from d.265.1.2: Pseudouridine synthase II TruB appears in the current release, SCOPe 2.08