SCOPe 2.07: Protein: Spermidine synthase

Lineage for Protein: Spermidine synthase

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (60 families)
Family c.66.1.17: Spermidine synthase [69557] (3 proteins)
contains additional N-terminal tetramerisation all-beta domain, res. 1-71
Protein Spermidine synthase [69558] (6 species)
polyamine aminopropyltransferase

Species:

Bacillus subtilis [TaxId:1423] [82478] (1 PDB entry)
- Domains for 1iy9:
  1. Domain d1iy9a_: 1iy9 A: [76943]
    CASP5
  2. Domain d1iy9b_: 1iy9 B: [76944]
    CASP5
  3. Domain d1iy9c_: 1iy9 C: [76945]
    CASP5
  4. Domain d1iy9d_: 1iy9 D: [76946]
    CASP5
Human (Homo sapiens) [TaxId:9606] [142590] (5 PDB entries)
Uniprot P19623 15-300
1. Domains for 1zdz:
  1. Domain d1zdza_: 1zdz A: [303448]
    automated match to d2o06b_
    complexed with sam
  2. Domain d1zdzb_: 1zdz B: [303449]
    automated match to d2o06b_
    complexed with sam
2. Domains for 2o05:
  1. Domain d2o05a1: 2o05 A:15-300 [138858]
    complexed with mta
  2. Domain d2o05b_: 2o05 B: [138859]
    automated match to d2o05a1
    complexed with mta
3. Domains for 2o06:
  1. Domain d2o06a_: 2o06 A: [138860]
    automated match to d2o05a1
    complexed with mg, mta, put
  2. Domain d2o06b_: 2o06 B: [138861]
    automated match to d2o05a1
    complexed with mg, mta, put
4. Domains for 2o07:
  1. Domain d2o07a_: 2o07 A: [138862]
    automated match to d2o05a1
    complexed with mta, spd
  2. Domain d2o07b_: 2o07 B: [138863]
    automated match to d2o05a1
    complexed with mta, spd
5. Domains for 2o0l:
  1. Domain d2o0la_: 2o0l A: [138864]
    automated match to d2o05a1
    complexed with s4m
  2. Domain d2o0lb_: 2o0l B: [138865]
    automated match to d2o05a1
    complexed with s4m
Nematode (Caenorhabditis elegans) [TaxId:6239] [142589] (1 PDB entry)
Uniprot Q9U2F0 3-314
- Domain for 2b2c:
  - Domain d2b2ca1: 2b2c A:3-314 [127706]
    Other proteins in same PDB: d2b2cb_
Thale cress (Arabidopsis thaliana) [TaxId:3702] [117680] (4 PDB entries)
Uniprot Q9ZUB3
1. Domains for 1xj5:
  1. Domain d1xj5a_: 1xj5 A: [115378]
  2. Domain d1xj5b_: 1xj5 B: [115379]
  3. Domain d1xj5c_: 1xj5 C: [115380]
  4. Domain d1xj5d_: 1xj5 D: [115381]
2. Domains for 2q41:
  1. Domain d2q41a_: 2q41 A: [139815]
    automated match to d1xj5a_
  2. Domain d2q41b_: 2q41 B: [139816]
    automated match to d1xj5b_
  3. Domain d2q41c_: 2q41 C: [139817]
    automated match to d1xj5a_
  4. Domain d2q41d_: 2q41 D: [139818]
    automated match to d1xj5b_
3. Domains for 6o63:
  1. Domain d6o63a_: 6o63 A: [371049]
    automated match to d1xj5b_
    complexed with gol, peg, so4
  2. Domain d6o63b_: 6o63 B: [370974]
    automated match to d1xj5b_
    complexed with gol, peg, so4
  3. Domain d6o63c_: 6o63 C: [371019]
    automated match to d1xj5b_
    complexed with gol, peg, so4
  4. Domain d6o63d_: 6o63 D: [370979]
    automated match to d1xj5b_
    complexed with gol, peg, so4
4. Domains for 6o65:
  1. Domain d6o65a_: 6o65 A: [371085]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
  2. Domain d6o65b1: 6o65 B:34-331 [371098]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
  3. Domain d6o65c_: 6o65 C: [371048]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
  4. Domain d6o65d1: 6o65 D:34-331 [371029]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
  5. Domain d6o65e_: 6o65 E: [371015]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
  6. Domain d6o65f1: 6o65 F:34-331 [371123]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
  7. Domain d6o65g_: 6o65 G: [371070]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
  8. Domain d6o65h1: 6o65 H:34-331 [371002]
    Other proteins in same PDB: d6o65b2, d6o65d2, d6o65f2, d6o65h2
    automated match to d1xj5b_
    complexed with edo, hai, peg, s4m, so4
Thermotoga maritima [TaxId:2336] [69559] (2 PDB entries)
1. Domains for 1inl:
  1. Domain d1inla_: 1inl A: [66220]
  2. Domain d1inlb_: 1inl B: [66221]
  3. Domain d1inlc_: 1inl C: [66222]
  4. Domain d1inld_: 1inl D: [66223]
2. Domains for 1jq3:
  1. Domain d1jq3a_: 1jq3 A: [67079]
    complexed with aat
  2. Domain d1jq3b_: 1jq3 B: [67080]
    complexed with aat
  3. Domain d1jq3c_: 1jq3 C: [67081]
    complexed with aat
  4. Domain d1jq3d_: 1jq3 D: [67082]
    complexed with aat
Thermus thermophilus [TaxId:274] [102586] (1 PDB entry)
- Domains for 1uir:
  1. Domain d1uira_: 1uir A: [99429]
  2. Domain d1uirb_: 1uir B: [99430]

More info for Protein Spermidine synthase from c.66.1.17: Spermidine synthase

Timeline for Protein Spermidine synthase from c.66.1.17: Spermidine synthase:

Protein Spermidine synthase from c.66.1.17: Spermidine synthase first appeared in SCOP 1.59
Protein Spermidine synthase from c.66.1.17: Spermidine synthase appears in SCOPe 2.06
Protein Spermidine synthase from c.66.1.17: Spermidine synthase appears in the current release, SCOPe 2.08