Lineage for Protein: 1-deoxy-D-xylulose-5-phosphate reductoisomerase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2090218Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2090219Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2092282Family c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain [51800] (22 protein domains)
    family members also share a common alpha+beta fold in C-terminal domain
  6. 2092283Protein 1-deoxy-D-xylulose-5-phosphate reductoisomerase [69410] (2 species)

Species:

  1. 2092284Escherichia coli [TaxId:562] [69411] (11 PDB entries)
    Uniprot P45568
    1. Domains for 1jvs:
      1. 2092288Domain d1jvsa2: 1jvs A:1-125,A:275-300 [77188]
        Other proteins in same PDB: d1jvsa1, d1jvsa3, d1jvsa4, d1jvsa5, d1jvsb1, d1jvsb3, d1jvsb4
        complexed with ndp, so4
      2. 2092289Domain d1jvsb2: 1jvs B:1-125,B:275-300 [77191]
        Other proteins in same PDB: d1jvsa1, d1jvsa3, d1jvsa4, d1jvsa5, d1jvsb1, d1jvsb3, d1jvsb4
        complexed with ndp, so4
    2. Domains for 1k5h:
      1. 2092302Domain d1k5ha2: 1k5h A:1-125,A:275-300 [68193]
        Other proteins in same PDB: d1k5ha1, d1k5ha3, d1k5hb1, d1k5hb3, d1k5hc1, d1k5hc3
      2. 2092303Domain d1k5hb2: 1k5h B:1-125,B:275-300 [68196]
        Other proteins in same PDB: d1k5ha1, d1k5ha3, d1k5hb1, d1k5hb3, d1k5hc1, d1k5hc3
      3. 2092304Domain d1k5hc2: 1k5h C:1-125,C:275-300 [68199]
        Other proteins in same PDB: d1k5ha1, d1k5ha3, d1k5hb1, d1k5hb3, d1k5hc1, d1k5hc3
    3. Domains for 1onn:
      1. 2092306Domain d1onna2: 1onn A:1-125,A:275-300 [87154]
        Other proteins in same PDB: d1onna1, d1onna3, d1onnb1, d1onnb3
      2. 2092307Domain d1onnb2: 1onn B:1-125,B:275-300 [87157]
        Other proteins in same PDB: d1onna1, d1onna3, d1onnb1, d1onnb3
    4. Domains for 1ono:
      1. 2092300Domain d1onoa2: 1ono A:1-125,A:275-300 [87160]
        Other proteins in same PDB: d1onoa1, d1onoa3, d1onob1, d1onob3
        complexed with mn
      2. 2092301Domain d1onob2: 1ono B:1-125,B:275-300 [87163]
        Other proteins in same PDB: d1onoa1, d1onoa3, d1onob1, d1onob3
        complexed with mn
    5. Domains for 1onp:
      1. 2092308Domain d1onpa2: 1onp A:1-125,A:275-300 [87166]
        Other proteins in same PDB: d1onpa1, d1onpa3, d1onpb1, d1onpb3
        complexed with fom, mn
      2. 2092309Domain d1onpb2: 1onp B:1-125,B:275-300 [87169]
        Other proteins in same PDB: d1onpa1, d1onpa3, d1onpb1, d1onpb3
        complexed with fom, mn
    6. Domain for 1q0h:
    7. Domain for 1q0l:
    8. Domains for 1q0q:
      1. 2092285Domain d1q0qa2: 1q0q A:1-125,A:275-300 [104465]
        Other proteins in same PDB: d1q0qa1, d1q0qa3, d1q0qb1, d1q0qb3
        complexed with dxp, ndp
      2. 2092286Domain d1q0qb2: 1q0q B:1-125,B:275-300 [104468]
        Other proteins in same PDB: d1q0qa1, d1q0qa3, d1q0qb1, d1q0qb3
        complexed with dxp, ndp
    9. Domains for 1t1r:
      1. 2092292Domain d1t1ra2: 1t1r A:1-125 [106263]
        Other proteins in same PDB: d1t1ra1, d1t1ra4, d1t1ra5, d1t1rb1, d1t1rb4, d1t1rb5
        complexed with imb, so4
      2. 2092293Domain d1t1ra3: 1t1r A:275-300 [106264]
        Other proteins in same PDB: d1t1ra1, d1t1ra4, d1t1ra5, d1t1rb1, d1t1rb4, d1t1rb5
        complexed with imb, so4
      3. 2092294Domain d1t1rb2: 1t1r B:1-125 [106267]
        Other proteins in same PDB: d1t1ra1, d1t1ra4, d1t1ra5, d1t1rb1, d1t1rb4, d1t1rb5
        complexed with imb, so4
      4. 2092295Domain d1t1rb3: 1t1r B:275-300 [106268]
        Other proteins in same PDB: d1t1ra1, d1t1ra4, d1t1ra5, d1t1rb1, d1t1rb4, d1t1rb5
        complexed with imb, so4
    10. Domains for 1t1s:
      1. 2092296Domain d1t1sa2: 1t1s A:1-125 [106271]
        Other proteins in same PDB: d1t1sa1, d1t1sa4, d1t1sa5, d1t1sb1, d1t1sb4, d1t1sb5
        complexed with cbq, mg, so4
      2. 2092297Domain d1t1sa3: 1t1s A:275-300 [106272]
        Other proteins in same PDB: d1t1sa1, d1t1sa4, d1t1sa5, d1t1sb1, d1t1sb4, d1t1sb5
        complexed with cbq, mg, so4
      3. 2092298Domain d1t1sb2: 1t1s B:1-125 [106275]
        Other proteins in same PDB: d1t1sa1, d1t1sa4, d1t1sa5, d1t1sb1, d1t1sb4, d1t1sb5
        complexed with cbq, mg, so4
      4. 2092299Domain d1t1sb3: 1t1s B:275-300 [106276]
        Other proteins in same PDB: d1t1sa1, d1t1sa4, d1t1sa5, d1t1sb1, d1t1sb4, d1t1sb5
        complexed with cbq, mg, so4
    11. Domains for 2egh:
      1. 2092290Domain d2egha2: 2egh A:1-125,A:275-300 [132122]
        Other proteins in same PDB: d2egha1, d2egha3, d2egha4, d2egha5, d2eghb1, d2eghb3, d2eghb4
        automatically matched to d1jvsa2
        complexed with fom, mg, ndp
      2. 2092291Domain d2eghb2: 2egh B:1-125,B:275-300 [132125]
        Other proteins in same PDB: d2egha1, d2egha3, d2egha4, d2egha5, d2eghb1, d2eghb3, d2eghb4
        automatically matched to d1jvsa2
        complexed with fom, mg, ndp
  2. 2092310Zymomonas mobilis [TaxId:542] [110420] (2 PDB entries)
    Uniprot Q9X5F2
    1. Domains for 1r0k:
      1. 2092311Domain d1r0ka2: 1r0k A:3-126,A:265-290 [104724]
        Other proteins in same PDB: d1r0ka1, d1r0ka3, d1r0kb1, d1r0kb3, d1r0kc1, d1r0kc3, d1r0kd1, d1r0kd3
        complexed with act
      2. 2092312Domain d1r0kb2: 1r0k B:3-126,B:265-290 [104727]
        Other proteins in same PDB: d1r0ka1, d1r0ka3, d1r0kb1, d1r0kb3, d1r0kc1, d1r0kc3, d1r0kd1, d1r0kd3
        complexed with act
      3. 2092313Domain d1r0kc2: 1r0k C:3-126,C:265-290 [104730]
        Other proteins in same PDB: d1r0ka1, d1r0ka3, d1r0kb1, d1r0kb3, d1r0kc1, d1r0kc3, d1r0kd1, d1r0kd3
        complexed with act
      4. 2092314Domain d1r0kd2: 1r0k D:3-126,D:265-290 [104733]
        Other proteins in same PDB: d1r0ka1, d1r0ka3, d1r0kb1, d1r0kb3, d1r0kc1, d1r0kc3, d1r0kd1, d1r0kd3
        complexed with act
    2. Domains for 1r0l:
      1. 2092315Domain d1r0la2: 1r0l A:3-126,A:265-290 [104736]
        Other proteins in same PDB: d1r0la1, d1r0la3, d1r0lb1, d1r0lb3, d1r0lc1, d1r0lc3, d1r0ld1, d1r0ld3
        complexed with ndp
      2. 2092316Domain d1r0lb2: 1r0l B:3-126,B:265-290 [104739]
        Other proteins in same PDB: d1r0la1, d1r0la3, d1r0lb1, d1r0lb3, d1r0lc1, d1r0lc3, d1r0ld1, d1r0ld3
        complexed with ndp
      3. 2092317Domain d1r0lc2: 1r0l C:3-126,C:265-290 [104742]
        Other proteins in same PDB: d1r0la1, d1r0la3, d1r0lb1, d1r0lb3, d1r0lc1, d1r0lc3, d1r0ld1, d1r0ld3
        complexed with ndp
      4. 2092318Domain d1r0ld2: 1r0l D:3-126,D:265-290 [104745]
        Other proteins in same PDB: d1r0la1, d1r0la3, d1r0lb1, d1r0lb3, d1r0lc1, d1r0lc3, d1r0ld1, d1r0ld3
        complexed with ndp

More info for Protein 1-deoxy-D-xylulose-5-phosphate reductoisomerase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain

Timeline for Protein 1-deoxy-D-xylulose-5-phosphate reductoisomerase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain:

  • Protein 1-deoxy-D-xylulose-5-phosphate reductoisomerase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain first appeared in SCOP 1.59
  • Protein 1-deoxy-D-xylulose-5-phosphate reductoisomerase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain appears in SCOPe 2.05