SCOPe 2.04: Species: Spinach (Spinacia oleracea) [TaxId: 3562]

Lineage for Species: Spinach (Spinacia oleracea) [TaxId: 3562]

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)
Family c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain [51800] (22 proteins)
family members also share a common alpha+beta fold in C-terminal domain
Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [51801] (19 species)
Species Spinach (Spinacia oleracea) [TaxId:3562] [69409] (8 PDB entries)
Uniprot P19866

PDB entries in Species: Spinach (Spinacia oleracea) [TaxId: 3562]:

Domain(s) for 1jn0:
1. Domain d1jn0a1: 1jn0 A:0-148,A:313-333 [66915]
  Other proteins in same PDB: d1jn0a2, d1jn0b2, d1jn0o2
  complexed with ndp, so4
2. Domain d1jn0b1: 1jn0 B:0-148,B:313-333 [66917]
  Other proteins in same PDB: d1jn0a2, d1jn0b2, d1jn0o2
  complexed with ndp, so4
3. Domain d1jn0o1: 1jn0 O:0-148,O:313-333 [66919]
  Other proteins in same PDB: d1jn0a2, d1jn0b2, d1jn0o2
  complexed with ndp, so4
Domain(s) for 1nbo:
1. Domain d1nboa1: 1nbo A:0-148,A:313-334 [85526]
  Other proteins in same PDB: d1nboa2, d1nbob2, d1nboo2
  complexed with nad, so4
2. Domain d1nbob1: 1nbo B:0-148,B:313-333 [85528]
  Other proteins in same PDB: d1nboa2, d1nbob2, d1nboo2
  complexed with nad, so4
3. Domain d1nboo1: 1nbo O:0-148,O:313-334 [85530]
  Other proteins in same PDB: d1nboa2, d1nbob2, d1nboo2
  complexed with nad, so4
Domain(s) for 1rm3:
1. Domain d1rm3a1: 1rm3 A:1-148,A:313-333 [104994]
  Other proteins in same PDB: d1rm3a2, d1rm3b2, d1rm3o2
  complexed with ndp, so4; mutant
2. Domain d1rm3b1: 1rm3 B:1-148,B:313-333 [104996]
  Other proteins in same PDB: d1rm3a2, d1rm3b2, d1rm3o2
  complexed with ndp, so4; mutant
3. Domain d1rm3o1: 1rm3 O:1-148,O:313-333 [104998]
  Other proteins in same PDB: d1rm3a2, d1rm3b2, d1rm3o2
  complexed with ndp, so4; mutant
Domain(s) for 1rm4:
1. Domain d1rm4a1: 1rm4 A:1-148,A:313-333 [105000]
  Other proteins in same PDB: d1rm4a2, d1rm4b2, d1rm4o2
  complexed with ndp, so4
2. Domain d1rm4b1: 1rm4 B:1-148,B:313-333 [105002]
  Other proteins in same PDB: d1rm4a2, d1rm4b2, d1rm4o2
  complexed with ndp, so4
3. Domain d1rm4o1: 1rm4 O:1-148,O:313-333 [105004]
  Other proteins in same PDB: d1rm4a2, d1rm4b2, d1rm4o2
  complexed with ndp, so4
Domain(s) for 1rm5:
1. Domain d1rm5a1: 1rm5 A:1-148,A:313-333 [105006]
  Other proteins in same PDB: d1rm5a2, d1rm5b2, d1rm5o2
  complexed with ndp, so4; mutant
2. Domain d1rm5b1: 1rm5 B:1-148,B:313-333 [105008]
  Other proteins in same PDB: d1rm5a2, d1rm5b2, d1rm5o2
  complexed with ndp, so4; mutant
3. Domain d1rm5o1: 1rm5 O:1-148,O:313-333 [105010]
  Other proteins in same PDB: d1rm5a2, d1rm5b2, d1rm5o2
  complexed with ndp, so4; mutant
Domain(s) for 2hki:
- Domain d2hkia1: 2hki A:1-152,A:316-335 [136551]
  Other proteins in same PDB: d2hkia2
  automatically matched to d1nboa1
  complexed with so4
Domain(s) for 2pkq:
1. Domain d2pkqo1: 2pkq O:0-148,O:313-333 [145748]
  Other proteins in same PDB: d2pkqo2, d2pkqp2, d2pkqq2, d2pkqr2, d2pkqs2, d2pkqt2
  complexed with ndp, so4
2. Domain d2pkqp1: 2pkq P:0-148,P:313-332 [139710]
  Other proteins in same PDB: d2pkqo2, d2pkqp2, d2pkqq2, d2pkqr2, d2pkqs2, d2pkqt2
  automatically matched to d1nboa1
  complexed with ndp, so4
3. Domain d2pkqq1: 2pkq Q:0-148,Q:313-333 [145750]
  Other proteins in same PDB: d2pkqo2, d2pkqp2, d2pkqq2, d2pkqr2, d2pkqs2, d2pkqt2
  automatically matched to 2PKQ O:0-148,O:313-333
  complexed with ndp, so4
4. Domain d2pkqr1: 2pkq R:0-148,R:313-332 [139712]
  Other proteins in same PDB: d2pkqo2, d2pkqp2, d2pkqq2, d2pkqr2, d2pkqs2, d2pkqt2
  automatically matched to d1nboa1
  complexed with ndp, so4
5. Domain d2pkqs1: 2pkq S:0-148,S:313-332 [139714]
  Other proteins in same PDB: d2pkqo2, d2pkqp2, d2pkqq2, d2pkqr2, d2pkqs2, d2pkqt2
  automatically matched to d1nboa1
  complexed with ndp, so4
6. Domain d2pkqt1: 2pkq T:0-148,T:313-333 [145752]
  Other proteins in same PDB: d2pkqo2, d2pkqp2, d2pkqq2, d2pkqr2, d2pkqs2, d2pkqt2
  automatically matched to 2PKQ O:0-148,O:313-333
  complexed with ndp, so4

Domain(s) for 2pkr:

Domain d2pkra1: 2pkr A:0-148,A:313-333 [139716]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrb1: 2pkr B:0-148,B:313-333 [139718]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrc1: 2pkr C:0-148,C:313-333 [139720]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrd1: 2pkr D:0-148,D:313-333 [139722]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrh1: 2pkr H:0-148,H:313-333 [139724]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkri1: 2pkr I:0-148,I:313-333 [139726]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrl1: 2pkr L:0-148,L:313-333 [139728]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrm1: 2pkr M:0-148,M:313-333 [139730]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkro1: 2pkr O:0-148,O:313-333 [139732]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrp1: 2pkr P:0-148,P:313-333 [139734]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrq1: 2pkr Q:0-148,Q:313-333 [139736]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

Domain d2pkrr1: 2pkr R:0-148,R:313-333 [139738]
Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
automatically matched to d1nboa1
complexed with ndp, so4

More info for Species Spinach (Spinacia oleracea) [TaxId:3562] from c.2.1.3 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)

Timeline for Species Spinach (Spinacia oleracea) [TaxId:3562] from c.2.1.3 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH):

Species Spinach (Spinacia oleracea) [TaxId:3562] from c.2.1.3 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) first appeared in SCOP 1.59
Species Spinach (Spinacia oleracea) [TaxId:3562] from c.2.1.3 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) appears in SCOPe 2.03
Species Spinach (Spinacia oleracea) [TaxId:3562] from c.2.1.3 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) appears in SCOPe 2.05
Species Spinach (Spinacia oleracea) [TaxId:3562] from c.2.1.3 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) appears in the current release, SCOPe 2.07