SCOPe 2.08: Protein: Deoxyribose-phosphate aldolase DeoC

Lineage for Protein: Deoxyribose-phosphate aldolase DeoC

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.10: Aldolase [51569] (9 families)
Common fold covers whole protein structure

Family c.1.10.1: Class I aldolase [51570] (13 proteins)
the catalytic lysine forms schiff-base intermediate with substrate
possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels

Protein Deoxyribose-phosphate aldolase DeoC [69394] (6 species)

Species:

Aeropyrum pernix [TaxId:56636] [89493] (1 PDB entry)
- Domains for 1n7k:
  1. Domain d1n7ka_: 1n7k A: [85374]
  2. Domain d1n7kb_: 1n7k B: [85375]
Aquifex aeolicus [TaxId:63363] [82271] (1 PDB entry)
- Domains for 1mzh:
  1. Domain d1mzha1: 1mzh A:101-319 [79698]
    Other proteins in same PDB: d1mzha2, d1mzhb2
    structural genomics; QR15
    CASP5
    complexed with po4
  2. Domain d1mzhb1: 1mzh B:1101-1319 [79699]
    Other proteins in same PDB: d1mzha2, d1mzhb2
    structural genomics; QR15
    CASP5
    complexed with po4
Escherichia coli [TaxId:562] [69395] (4 PDB entries)
Uniprot P00882
1. Domains for 1jcj:
  1. Domain d1jcja1: 1jcj A:1-251 [66499]
    Other proteins in same PDB: d1jcja2, d1jcjb2
    complexed with hpd
  2. Domain d1jcjb1: 1jcj B:1-250 [66500]
    Other proteins in same PDB: d1jcja2, d1jcjb2
    complexed with hpd
2. Domains for 1jcl:
  1. Domain d1jcla1: 1jcl A:1-251 [66501]
    Other proteins in same PDB: d1jcla2, d1jclb2
    complexed with hpd
  2. Domain d1jclb1: 1jcl B:1-250 [66502]
    Other proteins in same PDB: d1jcla2, d1jclb2
    complexed with hpd
3. Domains for 1ktn:
  1. Domain d1ktna_: 1ktn A: [72988]
  2. Domain d1ktnb_: 1ktn B: [72989]
4. Domains for 1p1x:
  1. Domain d1p1xa_: 1p1x A: [104060]
    Other proteins in same PDB: d1p1xb2
  2. Domain d1p1xb1: 1p1x B:1001-1250 [104061]
    Other proteins in same PDB: d1p1xb2
Pyrobaculum aerophilum [TaxId:13773] [141830] (1 PDB entry)
Uniprot Q8ZXK7 1-226
- Domain for 1vcv:
  - Domain d1vcva1: 1vcv A:1-226 [119988]
    Other proteins in same PDB: d1vcvb_
    complexed with zn
Thermotoga maritima [TaxId:2336] [82270] (3 PDB entries)
TM1559
1. Domains for 1o0y:
  1. Domain d1o0ya1: 1o0y A:1-247 [302799]
    Other proteins in same PDB: d1o0ya2, d1o0yb2
    automated match to d3r12a_
  2. Domain d1o0yb1: 1o0y B:1-247 [302801]
    Other proteins in same PDB: d1o0ya2, d1o0yb2
    automated match to d3r12a_
2. Domains for 3r12:
  1. Domain d3r12a1: 3r12 A:1-247 [184768]
    Other proteins in same PDB: d3r12a2, d3r12b2
    structural genomics
    CASP5
    complexed with cit, gol, pgo
  2. Domain d3r12b1: 3r12 B:1-247 [184769]
    Other proteins in same PDB: d3r12a2, d3r12b2
    structural genomics
    CASP5
    complexed with cit, gol, pgo
3. Domains for 3r13:
  1. Domain d3r13a1: 3r13 A:1-247 [184770]
    Other proteins in same PDB: d3r13a2, d3r13b2
    automated match to d1o0ya_
    complexed with act, gol, unl
  2. Domain d3r13b1: 3r13 B:1-248 [184771]
    Other proteins in same PDB: d3r13a2, d3r13b2
    automated match to d1o0ya_
    complexed with act, gol, unl
Thermus thermophilus [TaxId:274] [89492] (2 PDB entries)
1. Domains for 1j2w:
  1. Domain d1j2wa_: 1j2w A: [84043]
    structural genomics
  2. Domain d1j2wb_: 1j2w B: [84044]
    structural genomics
  3. Domain d1j2wc_: 1j2w C: [84045]
    structural genomics
  4. Domain d1j2wd_: 1j2w D: [84046]
    structural genomics
2. Domains for 1ub3:
  1. Domain d1ub3a_: 1ub3 A: [88395]
    structural genomics
    complexed with hpd
  2. Domain d1ub3b_: 1ub3 B: [88396]
    structural genomics
    complexed with hpd
  3. Domain d1ub3c_: 1ub3 C: [88397]
    structural genomics
    complexed with hpd
  4. Domain d1ub3d_: 1ub3 D: [88398]
    structural genomics
    complexed with hpd

More info for Protein Deoxyribose-phosphate aldolase DeoC from c.1.10.1: Class I aldolase

Timeline for Protein Deoxyribose-phosphate aldolase DeoC from c.1.10.1: Class I aldolase:

Protein Deoxyribose-phosphate aldolase DeoC from c.1.10.1: Class I aldolase first appeared in SCOP 1.59
Protein Deoxyribose-phosphate aldolase DeoC from c.1.10.1: Class I aldolase appears in SCOPe 2.07