Lineage for Protein: Deoxyribose-phosphate aldolase DeoC

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2085156Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 2085157Family c.1.10.1: Class I aldolase [51570] (13 protein domains)
    the catalytic lysine forms schiff-base intermediate with substrate
    possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels
  6. 2085254Protein Deoxyribose-phosphate aldolase DeoC [69394] (6 species)

Species:

  1. 2085255Aeropyrum pernix [TaxId:56636] [89493] (1 PDB entry)
  2. 2085258Aquifex aeolicus [TaxId:63363] [82271] (1 PDB entry)
  3. 2085261Escherichia coli [TaxId:562] [69395] (4 PDB entries)
    Uniprot P00882
    1. Domains for 1jcj:
      1. 2085266Domain d1jcja1: 1jcj A:1-251 [66499]
        Other proteins in same PDB: d1jcja2, d1jcjb2
        complexed with hpd
      2. 2085267Domain d1jcjb1: 1jcj B:1-250 [66500]
        Other proteins in same PDB: d1jcja2, d1jcjb2
        complexed with hpd
    2. Domains for 1jcl:
      1. 2085264Domain d1jcla1: 1jcl A:1-251 [66501]
        Other proteins in same PDB: d1jcla2, d1jclb2
        complexed with hpd
      2. 2085265Domain d1jclb1: 1jcl B:1-250 [66502]
        Other proteins in same PDB: d1jcla2, d1jclb2
        complexed with hpd
    3. Domains for 1ktn:
      1. 2085268Domain d1ktna_: 1ktn A: [72988]
      2. 2085269Domain d1ktnb_: 1ktn B: [72989]
    4. Domains for 1p1x:
      1. 2085262Domain d1p1xa_: 1p1x A: [104060]
        Other proteins in same PDB: d1p1xb2
      2. 2085263Domain d1p1xb1: 1p1x B:1001-1250 [104061]
        Other proteins in same PDB: d1p1xb2
  4. 2085270Pyrobaculum aerophilum [TaxId:13773] [141830] (1 PDB entry)
    Uniprot Q8ZXK7 1-226
  5. 2085272Thermotoga maritima [TaxId:2336] [82270] (3 PDB entries)
    TM1559
    1. Domains for 1o0y:
      1. 2085277Domain d1o0ya1: 1o0y A:1-247 [302799]
        Other proteins in same PDB: d1o0ya2, d1o0yb2
        automated match to d3r12a_
      2. 2085278Domain d1o0yb1: 1o0y B:1-247 [302801]
        Other proteins in same PDB: d1o0ya2, d1o0yb2
        automated match to d3r12a_
    2. Domains for 3r12:
      1. 2085273Domain d3r12a1: 3r12 A:1-247 [184768]
        Other proteins in same PDB: d3r12a2, d3r12b2
        structural genomics
        CASP5
        complexed with cit, gol, pgo
      2. 2085274Domain d3r12b1: 3r12 B:1-247 [184769]
        Other proteins in same PDB: d3r12a2, d3r12b2
        structural genomics
        CASP5
        complexed with cit, gol, pgo
    3. Domains for 3r13:
      1. 2085275Domain d3r13a1: 3r13 A:1-247 [184770]
        Other proteins in same PDB: d3r13a2, d3r13b2
        automated match to d1o0ya_
        complexed with act, gol, unl
      2. 2085276Domain d3r13b1: 3r13 B:1-248 [184771]
        Other proteins in same PDB: d3r13a2, d3r13b2
        automated match to d1o0ya_
        complexed with act, gol, unl
  6. 2085279Thermus thermophilus [TaxId:274] [89492] (2 PDB entries)
    1. Domains for 1j2w:
      1. 2085284Domain d1j2wa_: 1j2w A: [84043]
        structural genomics
      2. 2085285Domain d1j2wb_: 1j2w B: [84044]
        structural genomics
      3. 2085286Domain d1j2wc_: 1j2w C: [84045]
        structural genomics
      4. 2085287Domain d1j2wd_: 1j2w D: [84046]
        structural genomics
    2. Domains for 1ub3:
      1. 2085280Domain d1ub3a_: 1ub3 A: [88395]
        structural genomics
        complexed with hpd
      2. 2085281Domain d1ub3b_: 1ub3 B: [88396]
        structural genomics
        complexed with hpd
      3. 2085282Domain d1ub3c_: 1ub3 C: [88397]
        structural genomics
        complexed with hpd
      4. 2085283Domain d1ub3d_: 1ub3 D: [88398]
        structural genomics
        complexed with hpd

More info for Protein Deoxyribose-phosphate aldolase DeoC from c.1.10.1: Class I aldolase

Timeline for Protein Deoxyribose-phosphate aldolase DeoC from c.1.10.1: Class I aldolase: