SCOPe 2.08: Family b.121.3.1: Nucleoplasmin-like core domain

Lineage for Family b.121.3.1: Nucleoplasmin-like core domain

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.3: Nucleoplasmin-like core domain [69203] (2 families)
   oligomerizes into a pentameric ring structure

5. Family b.121.3.1: Nucleoplasmin-like core domain [69204] (4 proteins)
   automatically mapped to Pfam PF03066

Proteins:

1. Chromatin decondensation protein 1 (Crp1, Nlp) [89223] (1 species)

   • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89224] (1 PDB entry)

2. Nucleophosmin (NO38) [117086] (1 species)

   • Species African clawed frog (Xenopus laevis) [TaxId:8355] [117087] (2 PDB entries)
     Uniprot P07222 16-122

3. Nucleoplasmin core [69205] (1 species)

   • Species African clawed frog (Xenopus laevis) [TaxId:8355] [69206] (1 PDB entry)

4. automated matches [190762] (3 species)
   not a true protein

   1. Species African clawed frog (Xenopus laevis) [TaxId:8355] [188719] (1 PDB entry)

   2. Species Human (Homo sapiens) [TaxId:9606] [187973] (2 PDB entries)

   3. Species Mouse (Mus musculus) [TaxId:10090] [237668] (1 PDB entry)

More info for Family b.121.3.1: Nucleoplasmin-like core domain

Timeline for Family b.121.3.1: Nucleoplasmin-like core domain:

• Family b.121.3.1: Nucleoplasmin-like core domain first appeared in SCOP 1.59, called Family b.13.3.1: Nucleoplasmin core
  
• Family b.121.3.1: Nucleoplasmin-like core domain appears in SCOPe 2.07