SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1980368Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 1980369Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 1980370Family a.3.1.1: monodomain cytochrome c [46627] (16 protein domains)
  6. 1980371Protein Cytochrome c'' [68950] (1 species)
    close homologue of SHP
  7. 1980372Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [68951] (3 PDB entries)

PDB entries in Species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]:

  1. Domain(s) for 1e8e:
  2. Domain(s) for 1gu2:
    1. 1980373Domain d1gu2a_: 1gu2 A: [76348]
      complexed with hec
    2. 1980374Domain d1gu2b_: 1gu2 B: [76349]
      complexed with hec
  3. Domain(s) for 1oae:
    1. 1980375Domain d1oaea_: 1oae A: [92704]
      complexed with gol, hec, so4
    2. 1980376Domain d1oaeb_: 1oae B: [92705]
      complexed with gol, hec, so4

More info for Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] from a.3.1.1 Cytochrome c''

Timeline for Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] from a.3.1.1 Cytochrome c'':