SCOP 1.65: Protein: Rho termination factor, RNA-binding domain

Lineage for Protein: Rho termination factor, RNA-binding domain

Root: SCOP 1.65
Class b: All beta proteins [48724] (126 folds)
Fold b.40: OB-fold [50198] (9 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (11 families)
Family b.40.4.5: Cold shock DNA-binding domain-like [50282] (16 proteins)
barrel, closed; n=5, S=8
Protein Rho termination factor, RNA-binding domain [68910] (1 species)

Species:

Escherichia coli [TaxId:562] [68911] (6 PDB entries)
1. Domain for 1a62:
  - Domain d1a62_2: 1a62 48-125 [64709]
    Other proteins in same PDB: d1a62_1
2. Domain for 1a63:
  - Domain d1a63_2: 1a63 48-130 [64711]
    Other proteins in same PDB: d1a63_1
3. Domains for 1a8v:
  1. Domain d1a8va2: 1a8v A:48-118 [64713]
    Other proteins in same PDB: d1a8va1, d1a8vb1
  2. Domain d1a8vb2: 1a8v B:48-118 [64715]
    Other proteins in same PDB: d1a8va1, d1a8vb1
    complexed with cu
4. Domains for 1pv4:
  1. Domain d1pv4a2: 1pv4 A:48-126 [88296]
    Other proteins in same PDB: d1pv4a1, d1pv4a3, d1pv4b2, d1pv4c1, d1pv4c3, d1pv4d1, d1pv4d3, d1pv4e1, d1pv4e3, d1pv4f1, d1pv4f3
  2. Domain d1pv4b1: 1pv4 B:51-126 [88298]
    Other proteins in same PDB: d1pv4a1, d1pv4a3, d1pv4b2, d1pv4c1, d1pv4c3, d1pv4d1, d1pv4d3, d1pv4e1, d1pv4e3, d1pv4f1, d1pv4f3
  3. Domain d1pv4c2: 1pv4 C:48-126 [88301]
    Other proteins in same PDB: d1pv4a1, d1pv4a3, d1pv4b2, d1pv4c1, d1pv4c3, d1pv4d1, d1pv4d3, d1pv4e1, d1pv4e3, d1pv4f1, d1pv4f3
  4. Domain d1pv4d2: 1pv4 D:48-126 [88304]
    Other proteins in same PDB: d1pv4a1, d1pv4a3, d1pv4b2, d1pv4c1, d1pv4c3, d1pv4d1, d1pv4d3, d1pv4e1, d1pv4e3, d1pv4f1, d1pv4f3
  5. Domain d1pv4e2: 1pv4 E:48-126 [88307]
    Other proteins in same PDB: d1pv4a1, d1pv4a3, d1pv4b2, d1pv4c1, d1pv4c3, d1pv4d1, d1pv4d3, d1pv4e1, d1pv4e3, d1pv4f1, d1pv4f3
  6. Domain d1pv4f2: 1pv4 F:48-126 [88310]
    Other proteins in same PDB: d1pv4a1, d1pv4a3, d1pv4b2, d1pv4c1, d1pv4c3, d1pv4d1, d1pv4d3, d1pv4e1, d1pv4e3, d1pv4f1, d1pv4f3
    complexed with mse
5. Domains for 1pvo:
  1. Domain d1pvoa2: 1pvo A:48-126 [88317]
    Other proteins in same PDB: d1pvoa1, d1pvoa3, d1pvob2, d1pvoc1, d1pvoc3, d1pvod1, d1pvod3, d1pvoe1, d1pvoe3, d1pvof1, d1pvof3
  2. Domain d1pvob1: 1pvo B:51-126 [88319]
    Other proteins in same PDB: d1pvoa1, d1pvoa3, d1pvob2, d1pvoc1, d1pvoc3, d1pvod1, d1pvod3, d1pvoe1, d1pvoe3, d1pvof1, d1pvof3
  3. Domain d1pvoc2: 1pvo C:48-126 [88322]
    Other proteins in same PDB: d1pvoa1, d1pvoa3, d1pvob2, d1pvoc1, d1pvoc3, d1pvod1, d1pvod3, d1pvoe1, d1pvoe3, d1pvof1, d1pvof3
  4. Domain d1pvod2: 1pvo D:48-126 [88325]
    Other proteins in same PDB: d1pvoa1, d1pvoa3, d1pvob2, d1pvoc1, d1pvoc3, d1pvod1, d1pvod3, d1pvoe1, d1pvoe3, d1pvof1, d1pvof3
  5. Domain d1pvoe2: 1pvo E:48-126 [88328]
    Other proteins in same PDB: d1pvoa1, d1pvoa3, d1pvob2, d1pvoc1, d1pvoc3, d1pvod1, d1pvod3, d1pvoe1, d1pvoe3, d1pvof1, d1pvof3
  6. Domain d1pvof2: 1pvo F:48-126 [88331]
    Other proteins in same PDB: d1pvoa1, d1pvoa3, d1pvob2, d1pvoc1, d1pvoc3, d1pvod1, d1pvod3, d1pvoe1, d1pvoe3, d1pvof1, d1pvof3
    complexed with anp
6. Domains for 2a8v:
  1. Domain d2a8va2: 2a8v A:48-118 [64753]
    Other proteins in same PDB: d2a8va1, d2a8vb1, d2a8vc1
  2. Domain d2a8vb2: 2a8v B:48-118 [64755]
    Other proteins in same PDB: d2a8va1, d2a8vb1, d2a8vc1
  3. Domain d2a8vc2: 2a8v C:48-118 [64757]
    Other proteins in same PDB: d2a8va1, d2a8vb1, d2a8vc1
    protein/RNA complex

More info for Protein Rho termination factor, RNA-binding domain from b.40.4.5: Cold shock DNA-binding domain-like

Timeline for Protein Rho termination factor, RNA-binding domain from b.40.4.5: Cold shock DNA-binding domain-like:

Protein Rho termination factor, RNA-binding domain from b.40.4.5: Cold shock DNA-binding domain-like first appeared in SCOP 1.59
Protein Rho termination factor, RNA-binding domain from b.40.4.5: Cold shock DNA-binding domain-like appears in SCOP 1.63
Protein Rho termination factor, RNA-binding domain from b.40.4.5: Cold shock DNA-binding domain-like appears in SCOP 1.67
Protein Rho termination factor, RNA-binding domain from b.40.4.5: Cold shock DNA-binding domain-like appears in the current release, SCOPe 2.08