SCOPe 2.07: Domain d1kpsa1: 1kps A:1-158

Lineage for d1kpsa1 (1kps A:1-158)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.20: UBC-like [54494] (1 superfamily)
   alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2

4. Superfamily d.20.1: UBC-like [54495] (5 families)

5. Family d.20.1.1: UBC-related [54496] (7 proteins)

6. Protein Ubiquitin conjugating enzyme, UBC [54497] (34 species)

7. Species Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (29 PDB entries)
   identical sequence in many other species

8. Domain d1kpsa1: 1kps A:1-158 [68786]
   Other proteins in same PDB: d1kpsa2, d1kpsb_, d1kpsd_
   complexed with so4

Details for d1kpsa1

PDB Entry: 1kps, 2.5 Å

PDB Description: structural basis for e2-mediated sumo conjugation revealed by a complex between ubiquitin conjugating enzyme ubc9 and rangap1

PDB Compounds: (A:) Ubiquitin-like protein SUMO-1 conjugating enzyme

SCOPe Domain Sequences for d1kpsa1:

Sequence; same for both SEQRES and ATOM records:

>d1kpsa1 d.20.1.1 (A:1-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}
msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
nepniqdpaqaeaytiycqnrveyekrvraqakkfaps

Timeline for d1kpsa1:

• d1kpsa1 first appeared in SCOP 1.59, called d1kpsa_
  
• d1kpsa1 appears in SCOPe 2.06
  
• d1kpsa1 appears in the current release, SCOPe 2.08