SCOPe 2.05: Domain d1knzd_: 1knz D:

Lineage for d1knzd_ (1knz D:)

1. Root: SCOPe 2.05

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.34: NSP3 homodimer [69902] (1 superfamily)
   2 domains: (1) all-alpha, (2) alpha+beta; asymmetric homodimer with each domain intertwining with its counterpart

4. Superfamily e.34.1: NSP3 homodimer [69903] (1 family)
   automatically mapped to Pfam PF01665

5. Family e.34.1.1: NSP3 homodimer [69904] (1 protein)

6. Protein NSP3 homodimer [69905] (1 species)
   non-structural RNA-binding protein

7. Species Simian 11 rotavirus [TaxId:10923] [69906] (1 PDB entry)

8. Domain d1knzd_: 1knz D: [68712]
   protein/RNA complex

Details for d1knzd_

PDB Entry: 1knz, 2.45 Å

PDB Description: recognition of the rotavirus mrna 3' consensus by an asymmetric nsp3 homodimer

PDB Compounds: (D:) Nonstructural RNA-binding Protein 34

SCOPe Domain Sequences for d1knzd_:

Sequence, based on SEQRES records:

>d1knzd_ e.34.1.1 (D:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
gsmestqqmavsiinssfeaavvaatsalenmgieydyqdiysrvknkfdfvmddsgvkn
npigkaitidqalnnkfgsairnrnwladtsrpakldedvnklrmmlsskgidqkmrvln
acfsvkripgksssiikctklmrdklergeve

Sequence, based on observed residues (ATOM records):

>d1knzd_ e.34.1.1 (D:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
gsmestqqmavsiinssfeaavvaatsalenmgieydyqdiysrvknkfdfvmddsgvkn
npigkaitidqalndtsrpakldedvnklrmmlsskgidqkmrvlnacfsvkripgksss
iikctklmrdklergeve

Timeline for d1knzd_:

• d1knzd_ first appeared in SCOP 1.59
  
• d1knzd_ appears in SCOPe 2.04
  
• d1knzd_ is called d1knzd1 in SCOPe 2.06
  
• d1knzd_ appears in the current release, SCOPe 2.08, called d1knzd1