SCOPe 2.08: Domain d1kcfa2: 1kcf A:39-256

Lineage for d1kcfa2 (1kcf A:39-256)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.7: Mitochondrial resolvase ydc2 catalytic domain [69533] (1 protein)
   automatically mapped to Pfam PF09159

6. Protein Mitochondrial resolvase ydc2 catalytic domain [69534] (1 species)

7. Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [69535] (1 PDB entry)

8. Domain d1kcfa2: 1kcf A:39-256 [68435]
   Other proteins in same PDB: d1kcfa1, d1kcfb1
   complexed with so4

Details for d1kcfa2

PDB Entry: 1kcf, 2.3 Å

PDB Description: Crystal Structure of the Yeast Mitochondrial Holliday Junction Resolvase, Ydc2

PDB Compounds: (A:) hypothetical 30.2 kd protein c25g10.02 in chromosome I

SCOPe Domain Sequences for d1kcfa2:

Sequence, based on SEQRES records:

>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
tsrvlgidlgiknfsycfasqnedskviihnwsvenltekngldiqwtedfqpssmadls
iqlfntlhekfnphvilmerqryrsgiatipewtlrvnmlesmlyalhyaekrnsieqki
qypfllslspkstysywasvlntkasfskkksrvqmvkelidgqkilfeneealykwnng
srvefkkddmadsaliasgwmrwqaqlkhyrnfckqfl

Sequence, based on observed residues (ATOM records):

>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
tsrvlgidlgiknfsycfasqnedskviihnwsvenltekngldiqwtedfqpssmadls
iqlfntlhekfnphvilmerqryrsgiatipewtlrvnmlesmlyalhyaekrnypflls
lspkstysywasvlnkksrvqmvkelidgqkilfeneealykwnngsrvefkkddmadsa
liasgwmrwqaqlkhyrnfckqfl

Timeline for d1kcfa2:

• d1kcfa2 first appeared in SCOP 1.59
  
• d1kcfa2 appears in SCOPe 2.07