SCOPe 2.07: Domain d1k6yc2: 1k6y C:56-209

Lineage for d1k6yc2 (1k6y C:56-209)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (16 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)

6. Protein Retroviral integrase, catalytic domain [53108] (4 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (73 PDB entries)

8. Domain d1k6yc2: 1k6y C:56-209 [68244]
   Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
   complexed with k, po4, zn

Details for d1k6yc2

PDB Entry: 1k6y, 2.4 Å

PDB Description: Crystal Structure of a Two-Domain Fragment of HIV-1 Integrase

PDB Compounds: (C:) integrase

SCOPe Domain Sequences for d1k6yc2:

Sequence, based on SEQRES records:

>d1k6yc2 c.55.3.2 (C:56-209) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlkta
vqmavfihnkkrkggiggysagerivdiiatdiq

Sequence, based on observed residues (ATOM records):

>d1k6yc2 c.55.3.2 (C:56-209) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacdwagikqedgviesmnkelkkiigqvrdqaehlktavqmavfihn
kkrkggiggysagerivdiiatdiq

Timeline for d1k6yc2:

• d1k6yc2 first appeared in SCOP 1.59
  
• d1k6yc2 appears in SCOPe 2.06
  
• d1k6yc2 appears in the current release, SCOPe 2.08