SCOPe 2.08: Domain d1jrod2: 1jro D:124-777

Lineage for d1jrod2 (1jro D:124-777)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.133: Molybdenum cofactor-binding domain [56002] (1 superfamily)
   beta(2)-alpha-beta-alpha-beta; 2 layers: a/b; mixed sheet: order 1243: crossing loops

4. Superfamily d.133.1: Molybdenum cofactor-binding domain [56003] (2 families)
   duplication: consists of 4 structural repeats arranged in 2 lobes
   contains one left-hand beta-alpha-beta unit per lobe
   automatically mapped to Pfam PF02738

5. Family d.133.1.1: Molybdenum cofactor-binding domain [56004] (7 proteins)

6. Protein Xanthine dehydrogenase chain B, C-terminal domain [69813] (1 species)

7. Species Rhodobacter capsulatus [TaxId:1061] [69814] (4 PDB entries)

8. Domain d1jrod2: 1jro D:124-777 [67148]
   Other proteins in same PDB: d1jroa1, d1jroa2, d1jroa3, d1jroa4, d1jrob1, d1jroc1, d1jroc2, d1jroc3, d1jroc4, d1jrod1, d1jroe1, d1jroe2, d1jroe3, d1jroe4, d1jrof1, d1jrog1, d1jrog2, d1jrog3, d1jrog4, d1jroh1
   complexed with ca, fad, fes, mos, mte

Details for d1jrod2

PDB Entry: 1jro, 2.7 Å

PDB Description: crystal structure of xanthine dehydrogenase from rhodobacter capsulatus

PDB Compounds: (D:) xanthine dehydrogenase, chain B

SCOPe Domain Sequences for d1jrod2:

Sequence, based on SEQRES records:

>d1jrod2 d.133.1.1 (D:124-777) Xanthine dehydrogenase chain B, C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
pailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaala
lpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaiaca
vaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsadl
slpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehlarg
mgrdpaelralnfydppergglsappsppepiatkktqtthygqevadcvlgelvtrlqk
sanfttrraeiaawnstnrtlargialspvkfgisftlthlnqagalvqiytdgsvalnh
ggtemgqglhakmvqvaaavlgidpvqvritatdtskvpntsataassgadmngmavkda
cetlrgrlagfvaaregcaardvifdagqvqasgkswrfaeivaaaymarislsatgfya
tpklswdrlrgqgrpflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldigq
iegayvqgagwltteelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreetif
rskavgeppfllgisaflalhdacaacgphwpdlqapatpeavlaavrraegra

Sequence, based on observed residues (ATOM records):

>d1jrod2 d.133.1.1 (D:124-777) Xanthine dehydrogenase chain B, C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
pailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaala
lpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaiaca
vaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsadl
slpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehlarg
mgrdpaelralnfydppekktqtthygqevadcvlgelvtrlqksanfttrraeiaawns
tnrtlargialspvkfgisftlthlnqagalvqiytdgsvalnhggtemgqglhakmvqv
aaavlgidpvqvritatdtskvpntsataassgadmngmavkdacetlrgrlagfvaare
gcaardvifdagqvqasgkswrfaeivaaaymarislsatgfyatpklswdrlrgqgrpf
lyfaygaaitevvidrltgenrilrtdilhdagaslnpaldigqiegayvqgagwlttee
lvwdhcgrlmthapstykipafsdrprifnvalwdqpnreetifrskavgeppfllgisa
flalhdacaacgphwpdlqapatpeavlaavrraegra

Timeline for d1jrod2:

• d1jrod2 first appeared in SCOP 1.59
  
• d1jrod2 appears in SCOPe 2.07