Lineage for d1jnnl1 (1jnn L:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653521Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)
  8. 653705Domain d1jnnl1: 1jnn L:1-107 [66962]
    Other proteins in same PDB: d1jnnh1, d1jnnh2, d1jnnl2
    part of anti-estradiol Fab 17E12E5
    complexed with est

Details for d1jnnl1

PDB Entry: 1jnn (more details), 3.2 Å

PDB Description: Crystal Structure of Fab-Estradiol Complexes
PDB Compounds: (L:) monoclonal anti-estradiol 17e12e5 immunoglobulin kappa chain

SCOP Domain Sequences for d1jnnl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1jnnl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
qivmtqtpaslsasvgetvtitcrasgniynylawyqqkqgkspqllvynaktlvdgvpl
rfsgsgsgtqyslkinslqpedfgnyychhfwntpytfgggtkleik

SCOP Domain Coordinates for d1jnnl1:

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(The format of our PDB-style files is described here.)

Timeline for d1jnnl1:

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Domains from same chain:
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d1jnnl2