SCOPe 2.06: Domain d1jcjb1: 1jcj B:1-250

Lineage for d1jcjb1 (1jcj B:1-250)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.1: Class I aldolase [51570] (13 proteins)
   the catalytic lysine forms schiff-base intermediate with substrate
   possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels

6. Protein Deoxyribose-phosphate aldolase DeoC [69394] (6 species)

7. Species Escherichia coli [TaxId:562] [69395] (4 PDB entries)
   Uniprot P00882

8. Domain d1jcjb1: 1jcj B:1-250 [66500]
   Other proteins in same PDB: d1jcja2, d1jcjb2
   complexed with hpd

Details for d1jcjb1

PDB Entry: 1jcj, 1.1 Å

PDB Description: observation of covalent intermediates in an enzyme mechanism at atomic resolution

PDB Compounds: (B:) deoxyribose-phosphate aldolase

SCOPe Domain Sequences for d1jcjb1:

Sequence; same for both SEQRES and ATOM records:

>d1jcjb1 c.1.10.1 (B:1-250) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}
mtdlkasslralklmdlttlndddtdekvialchqaktpvgntaaiciyprfipiarktl
keqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgfd
lvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatpe
sarimmevirdmgvektvgflpaggvrtaedaqkylaiadelfgadwadarhyrfgassl
lasllkalgh

Timeline for d1jcjb1:

• d1jcjb1 first appeared in SCOP 1.59, called d1jcjb_
  
• d1jcjb1 was called d1jcjb_ in SCOPe 2.05
  
• d1jcjb1 appears in SCOPe 2.07
  
• d1jcjb1 appears in the current release, SCOPe 2.08