Lineage for d1i8ma1 (1i8m A:1-107)

  1. Root: SCOP 1.67
  2. 362614Class b: All beta proteins [48724] (141 folds)
  3. 362615Fold b.1: Immunoglobulin-like beta-sandwich [48725] (22 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 362616Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 362617Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (24 proteins)
  6. 363425Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 363836Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (160 PDB entries)
  8. 363900Domain d1i8ma1: 1i8m A:1-107 [66082]
    Other proteins in same PDB: d1i8ma2, d1i8mb1, d1i8mb2, d1i8mh1, d1i8mh2, d1i8ml2
    part of anti-ssDNA Fab
    complexed with so4

Details for d1i8ma1

PDB Entry: 1i8m (more details), 2.1 Å

PDB Description: crystal structure of a recombinant anti-single-stranded dna antibody fragment complexed with dt5
PDB Compounds: (A:)

SCOP Domain Sequences for d1i8ma1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1i8ma1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4}
elqmtqspaslsasvgetvtitcraseniysylawyqqkqgkspqllvynaktlaegvps
rfsgsgsgtqfslkinslqpedfgsyycqhhygtpltfgagtklelk

SCOP Domain Coordinates for d1i8ma1:

Click to download the PDB-style file with coordinates for d1i8ma1.
(The format of our PDB-style files is described here.)

Timeline for d1i8ma1: