SCOP 1.63: Domain d1e9yb2: 1e9y B:132-431,B:481-569

Lineage for d1e9yb2 (1e9y B:132-431,B:481-569)

1. Root: SCOP 1.63

2. Class c: Alpha and beta proteins (a/b) [51349] (117 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (26 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (12 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.2: alpha-subunit of urease, catalytic domain [51560] (1 protein)

6. Protein alpha-subunit of urease, catalytic domain [51561] (3 species)

7. Species Helicobacter pylori [TaxId:210] [69393] (2 PDB entries)

8. Domain d1e9yb2: 1e9y B:132-431,B:481-569 [64849]
   Other proteins in same PDB: d1e9ya1, d1e9ya2, d1e9yb1
   complexed with hae, ni

Details for d1e9yb2

PDB Entry: 1e9y, 3 Å

PDB Description: crystal structure of helicobacter pylori urease in complex with acetohydroxamic acid

SCOP Domain Sequences for d1e9yb2:

Sequence, based on SEQRES records:

>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori}
gidthihfispqqiptafasgvttmigggtgpadgtnattitpgrrnlkwmlraaeeysm
nlgflakgnasndasladqieagaigfkihedwgttpsainhaldvadkydvqvaihtdt
lneagcvedtmaaiagrtmhtfhtegaggghapdiikvagehnilpastnptipftvnte
aehmdmlmvchhldksikedvqfadsrirpqtiaaedtlhdmgafsitssdsqamgrvge
vitrtwqtadknkkefgrlkeekgdndnfrikrylskytinpaiahgiseyvgsvevgkv
Xhhgkakydanitfvsqaaydkgikeelglerqvlpvkncrnvtkkdmqfnnttahievn
petyhvfvdgkevtskpankvslaqlfsif

Sequence, based on observed residues (ATOM records):

>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori}
gidthihfispqqiptafasgvttmigggtgpadgtnattitpgrrnlkwmlraaeeysm
nlgflakgnasndasladqieagaigfkihedwgttpsainhaldvadkydvqvaihtdt
lneagcvedtmaaiagrtmhtfhtegaggghapdiikvagehnilpastnptipftvnte
aehmdmlmvchhkdksikedvqfadsrirpqtiaaedtlhdmgafsitssdsqamgrvge
vitrtwqtadknkkefgrlkeekgdndnfrikrylskytinpaiahgiseyvgsvevgkv
Xhhgkakydanitfvsqaaydkgikeelglerqvlpvkncrnvtkkdmqfnnttahievn
petyhvfvdgkevtskpankvslaqlfsif

Timeline for d1e9yb2:

• d1e9yb2 first appeared in SCOP 1.59
  
• d1e9yb2 appears in SCOP 1.61
  
• d1e9yb2 appears in SCOP 1.65
  
• d1e9yb2 appears in the current release, SCOPe 2.08