SCOPe 2.08: Protein: Sensory rhodopsin II

Lineage for Protein: Sensory rhodopsin II

Root: SCOPe 2.08
Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
Pfam PF13853. Phylogeny described in PubMed 12761335
Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)
Protein Sensory rhodopsin II [64526] (1 species)

Species:

Natronobacterium pharaonis [TaxId:2257] [64527] (14 PDB entries)
1. Domain for 1gu8:
  - Domain d1gu8a_: 1gu8 A: [70579]
    complexed with cl, ret
2. Domain for 1gue:
  - Domain d1guea_: 1gue A: [70581]
    complexed with cl, ret
3. Domain for 1h2s:
  - Domain d1h2sa_: 1h2s A: [76578]
    Other proteins in same PDB: d1h2sb_
    complexed with bog, ret
4. Domain for 1h68:
  - Domain d1h68a1: 1h68 A:2-218 [118486]
    complexed with cl, ret
5. Domain for 1jgj:
  - Domain d1jgja_: 1jgj A: [62952]
    complexed with bog, ret
6. Domain for 2f93:
  - Domain d2f93a_: 2f93 A: [133151]
    Other proteins in same PDB: d2f93b1
    automated match to d1h2sa_
    complexed with bog, ret
7. Domain for 2f95:
  - Domain d2f95a_: 2f95 A: [133152]
    Other proteins in same PDB: d2f95b1
    automated match to d1h2sa_
    complexed with bog, ret
8. Domain for 3qap:
  - Domain d3qapa_: 3qap A: [184310]
    automated match to d1h2sa_
    complexed with bog, l2p, lfa, ret
9. Domain for 3qdc:
  - Domain d3qdca_: 3qdc A: [184340]
    automated match to d1h2sa_
    complexed with bog, l2p, lfa, ret
10. Domain for 4gyc:
  - Domain d4gyca_: 4gyc A: [222273]
    automated match to d3qapa_
    complexed with lfa, ret; mutant
11. Domain for 5jje:
  - Domain d5jjea_: 5jje A: [329837]
    Other proteins in same PDB: d5jjeb_
    automated match to d1h2sa_
    complexed with bog, lfa, ret
12. Domain for 5jjf:
  - Domain d5jjfa_: 5jjf A: [329846]
    Other proteins in same PDB: d5jjfb_
    automated match to d1h2sa_
    complexed with bog, lfa, ret
13. Domain for 5jjj:
  - Domain d5jjja_: 5jjj A: [329839]
    automated match to d1h2sa_
    complexed with lfa, ret
14. Domains for 5jjn:
  1. Domain d5jjna_: 5jjn A: [329914]
    automated match to d1h2sa_
    complexed with bog, lfa, ret
  2. Domain d5jjnc_: 5jjn C: [329824]
    automated match to d1h2sa_
    complexed with bog, lfa, ret

More info for Protein Sensory rhodopsin II from f.13.1.1: Bacteriorhodopsin-like

Timeline for Protein Sensory rhodopsin II from f.13.1.1: Bacteriorhodopsin-like:

Protein Sensory rhodopsin II from f.13.1.1: Bacteriorhodopsin-like first appeared in SCOP 1.57, called Protein Sensory rhodopsin II from f.2.1.1: Seven-helix membrane receptors
Protein Sensory rhodopsin II from f.13.1.1: Bacteriorhodopsin-like appears in SCOPe 2.07