SCOPe 2.03: Protein: RNA-polymerase beta

Lineage for Protein: RNA-polymerase beta

Root: SCOPe 2.03
Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
Multidomain subunits of complex domain organization

Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families)

The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

Family e.29.1.1: RNA-polymerase beta [64485] (3 proteins)
Protein RNA-polymerase beta [64488] (2 species)

Species:

Thermus aquaticus [TaxId:271] [64489] (4 PDB entries)

Domain for 1i6v:
- Domain d1i6vc_: 1i6v C: [61856]
  Other proteins in same PDB: d1i6va1, d1i6va2, d1i6vb1, d1i6vb2, d1i6vd_, d1i6ve_
  protein/DNA complex; protein/RNA complex; complexed with mg, rfp, zn
Domain for 1ynj:
- Domain d1ynjc1: 1ynj C:1-1114 [144703]
  Other proteins in same PDB: d1ynja1, d1ynja2, d1ynjb1, d1ynjb2, d1ynjd1, d1ynjk1
  protein/RNA complex; complexed with srn, zn

Domain for 1ynn:

Domain d1ynnc1: 1ynn C:1-1114 [144705]
Other proteins in same PDB: d1ynna1, d1ynna2, d1ynnb1, d1ynnb2, d1ynnd1, d1ynnk1
automatically matched to 1YNJ C:1-1114
protein/RNA complex; complexed with rfp, zn

Domain for 2gho:
- Domain d2ghoc1: 2gho C:1-1114 [145196]
  Other proteins in same PDB: d2ghoa1, d2ghoa2, d2ghob1, d2ghob2, d2ghod1
  automatically matched to 1YNJ C:1-1114
  protein/RNA complex

Thermus thermophilus [TaxId:274] [75609] (9 PDB entries)
Uniprot Q8RQE9; part of multichain biological unit

Domains for 1iw7:

Domain d1iw7c_: 1iw7 C: [71474]
Other proteins in same PDB: d1iw7a1, d1iw7a2, d1iw7b1, d1iw7b2, d1iw7d_, d1iw7e_, d1iw7f1, d1iw7f2, d1iw7f3, d1iw7k1, d1iw7k2, d1iw7l1, d1iw7l2, d1iw7n_, d1iw7o_, d1iw7p1, d1iw7p2, d1iw7p3
complexed with mg, pb

Domain d1iw7m_: 1iw7 M: [71482]
Other proteins in same PDB: d1iw7a1, d1iw7a2, d1iw7b1, d1iw7b2, d1iw7d_, d1iw7e_, d1iw7f1, d1iw7f2, d1iw7f3, d1iw7k1, d1iw7k2, d1iw7l1, d1iw7l2, d1iw7n_, d1iw7o_, d1iw7p1, d1iw7p2, d1iw7p3
complexed with mg, pb

Domains for 1smy:

Domain d1smyc_: 1smy C: [105778]
Other proteins in same PDB: d1smya1, d1smya2, d1smyb1, d1smyb2, d1smyd_, d1smye_, d1smyf1, d1smyf2, d1smyf3, d1smyk1, d1smyk2, d1smyl1, d1smyl2, d1smyn_, d1smyo_, d1smyp1, d1smyp2, d1smyp3
complexed with g4p, mg, zn

Domain d1smym_: 1smy M: [105788]
Other proteins in same PDB: d1smya1, d1smya2, d1smyb1, d1smyb2, d1smyd_, d1smye_, d1smyf1, d1smyf2, d1smyf3, d1smyk1, d1smyk2, d1smyl1, d1smyl2, d1smyn_, d1smyo_, d1smyp1, d1smyp2, d1smyp3
complexed with g4p, mg, zn

Domains for 1zyr:

Domain d1zyrc1: 1zyr C:1-1119 [125853]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrd1, d1zyre1, d1zyrf1, d1zyrf2, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrn1, d1zyro1, d1zyrp1, d1zyrp2, d1zyrp3
automatically matched to d1iw7c_
protein/RNA complex; complexed with mg, std, zn

Domain d1zyrm1: 1zyr M:1-1119 [125863]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrd1, d1zyre1, d1zyrf1, d1zyrf2, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrn1, d1zyro1, d1zyrp1, d1zyrp2, d1zyrp3
automatically matched to d1iw7c_
protein/RNA complex; complexed with mg, std, zn

Domains for 2cw0:

Domain d2cw0c1: 2cw0 C:1-1119 [130902]
Other proteins in same PDB: d2cw0a1, d2cw0a2, d2cw0b1, d2cw0b2, d2cw0d1, d2cw0e1, d2cw0f1, d2cw0f2, d2cw0f3, d2cw0k1, d2cw0k2, d2cw0l1, d2cw0l2, d2cw0n1, d2cw0o1, d2cw0p1, d2cw0p2, d2cw0p3
automatically matched to d1iw7c_
complexed with mg, zn

Domain d2cw0m1: 2cw0 M:1-1119 [130912]
Other proteins in same PDB: d2cw0a1, d2cw0a2, d2cw0b1, d2cw0b2, d2cw0d1, d2cw0e1, d2cw0f1, d2cw0f2, d2cw0f3, d2cw0k1, d2cw0k2, d2cw0l1, d2cw0l2, d2cw0n1, d2cw0o1, d2cw0p1, d2cw0p2, d2cw0p3
automatically matched to d1iw7c_
complexed with mg, zn

Domains for 2o5j:
1. Domain d2o5jc1: 2o5j C:1-1119 [148605]
  Other proteins in same PDB: d2o5jd1, d2o5jn1
  automatically matched to d1iw7c_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
2. Domain d2o5jm1: 2o5j M:1-1119 [148607]
  Other proteins in same PDB: d2o5jd1, d2o5jn1
  automatically matched to d1iw7c_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
Domains for 2ppb:
1. Domain d2ppbc1: 2ppb C:1-1119 [149753]
  Other proteins in same PDB: d2ppbd1, d2ppbn1
  automatically matched to d1iw7c_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn
2. Domain d2ppbm1: 2ppb M:1-1119 [149755]
  Other proteins in same PDB: d2ppbd1, d2ppbn1
  automatically matched to d1iw7c_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn

Domains for 3dxj:

Domain d3dxjc1: 3dxj C:1-1119 [157927]
Other proteins in same PDB: d3dxjd1, d3dxje1, d3dxjn1, d3dxjo1
automatically matched to d1iw7c_
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn

Domain d3dxjm1: 3dxj M:1-1119 [157930]
Other proteins in same PDB: d3dxjd1, d3dxje1, d3dxjn1, d3dxjo1
automatically matched to d1iw7c_
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn

Domains for 4g7h:

Domain d4g7hc_: 4g7h C: [192523]
Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hd_, d4g7he_, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hn_, d4g7ho_
automated match to d1smyc_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Domain d4g7hm_: 4g7h M: [192829]
Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hd_, d4g7he_, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hn_, d4g7ho_
automated match to d1smyc_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Domains for 4g7o:

Domain d4g7oc_: 4g7o C: [192522]
Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7od_, d4g7oe_, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7on_, d4g7oo_
automated match to d1smyc_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Domain d4g7om_: 4g7o M: [192828]
Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7od_, d4g7oe_, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7on_, d4g7oo_
automated match to d1smyc_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

More info for Protein RNA-polymerase beta from e.29.1.1: RNA-polymerase beta

Timeline for Protein RNA-polymerase beta from e.29.1.1: RNA-polymerase beta:

Protein RNA-polymerase beta from e.29.1.1: RNA-polymerase beta first appeared in SCOP 1.57
Protein RNA-polymerase beta from e.29.1.1: RNA-polymerase beta appears in SCOPe 2.02
Protein RNA-polymerase beta from e.29.1.1: RNA-polymerase beta appears in SCOPe 2.04
Protein RNA-polymerase beta from e.29.1.1: RNA-polymerase beta appears in the current release, SCOPe 2.08