SCOPe 2.08: Species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Lineage for Species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.20: UBC-like [54494] (1 superfamily)
alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
Superfamily d.20.1: UBC-like [54495] (5 families)
Family d.20.1.1: UBC-related [54496] (7 proteins)
Protein Ubiquitin conjugating enzyme, UBC [54497] (34 species)
Species Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (23 PDB entries)

PDB entries in Species: Human (Homo sapiens), ubc13 [TaxId: 9606]:

Domain(s) for 1j7d:
- Domain d1j7db_: 1j7d B: [62681]
  complexed with Mms2
Domain(s) for 2c2v:
1. Domain d2c2vb2: 2c2v B:6-156 [129686]
  Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
2. Domain d2c2ve_: 2c2v E: [129688]
  Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
3. Domain d2c2vh_: 2c2v H: [129690]
  Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
4. Domain d2c2vk2: 2c2v K:6-156 [129692]
  Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
Domain(s) for 3w31:
- Domain d3w31b_: 3w31 B: [196731]
  automated match to d2c2vb_
  complexed with iod
Domain(s) for 4dhi:
- Domain d4dhid_: 4dhi D: [219758]
  Other proteins in same PDB: d4dhib_
  automated match to d1j7db_
Domain(s) for 4dhj:
1. Domain d4dhjc_: 4dhj C: [201702]
  Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
  automated match to d1j7db_
2. Domain d4dhjg_: 4dhj G: [201705]
  Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
  automated match to d1j7db_
3. Domain d4dhjk_: 4dhj K: [196008]
  Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
  automated match to d2c2vb_
4. Domain d4dhjn_: 4dhj N: [201709]
  Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
  automated match to d1j7db_
Domain(s) for 4dhz:
- Domain d4dhzf_: 4dhz F: [251459]
  Other proteins in same PDB: d4dhzb_, d4dhze_
  automated match to d3w31b_
Domain(s) for 4tkp:
- Domain d4tkpa_: 4tkp A: [275230]
  automated match to d2c2vb_
  complexed with so4, zn
Domain(s) for 5eya:
1. Domain d5eyaa_: 5eya A: [321262]
  Other proteins in same PDB: d5eyac_, d5eyad_
  automated match to d3w31b_
  complexed with zn
2. Domain d5eyab_: 5eya B: [321269]
  Other proteins in same PDB: d5eyac_, d5eyad_
  automated match to d3w31b_
  complexed with zn
Domain(s) for 5ywr:
- Domain d5ywra_: 5ywr A: [353374]
  automated match to d1j7db_
  complexed with fmt, pge, zn
Domain(s) for 6d6i:
1. Domain d6d6ib_: 6d6i B: [369631]
  Other proteins in same PDB: d6d6ic_, d6d6if_
  automated match to d2c2vb_
2. Domain d6d6ie_: 6d6i E: [369659]
  Other proteins in same PDB: d6d6ic_, d6d6if_
  automated match to d2c2vb_
Domain(s) for 6jky:
1. Domain d6jkyb_: 6jky B: [378275]
  Other proteins in same PDB: d6jkyc1, d6jkyc2, d6jkyf1, d6jkyf2
  automated match to d3w31b_
2. Domain d6jkye_: 6jky E: [378244]
  Other proteins in same PDB: d6jkyc1, d6jkyc2, d6jkyf1, d6jkyf2
  automated match to d3w31b_
Domain(s) for 6kfp:
- Domain d6kfpb_: 6kfp B: [382959]
  Other proteins in same PDB: d6kfpd1, d6kfpd2
  automated match to d1j7db_
Domain(s) for 6kg6:
- Domain d6kg6g_: 6kg6 G: [382958]
  Other proteins in same PDB: d6kg6c1, d6kg6c2
  automated match to d1j7db_
Domain(s) for 6kl4:
- Domain d6kl4b_: 6kl4 B: [383589]
  Other proteins in same PDB: d6kl4c_
  automated match to d3w31b_
Domain(s) for 6lp2:
- Domain d6lp2d_: 6lp2 D: [399840]
  Other proteins in same PDB: d6lp2c_
  automated match to d1j7db_
Domain(s) for 6p5b:
- Domain d6p5bc_: 6p5b C: [386326]
  Other proteins in same PDB: d6p5be_
  automated match to d1j7db_
Domain(s) for 6s53:
1. Domain d6s53c_: 6s53 C: [374050]
  Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
  automated match to d3w31b_
  complexed with mpd, zn
2. Domain d6s53e_: 6s53 E: [374063]
  Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
  automated match to d3w31b_
  complexed with mpd, zn
3. Domain d6s53i_: 6s53 I: [374042]
  Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
  automated match to d3w31b_
  complexed with mpd, zn
4. Domain d6s53k_: 6s53 K: [374057]
  Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
  automated match to d3w31b_
  complexed with mpd, zn
Domain(s) for 6ulh:
- Domain d6ulhc_: 6ulh C: [386384]
  Other proteins in same PDB: d6ulhe_
  automated match to d1j7db_
Domain(s) for 6ump:
- Domain d6umpc_: 6ump C: [386386]
  Other proteins in same PDB: d6umpe_
  automated match to d1j7db_
Domain(s) for 6ums:
- Domain d6umsc_: 6ums C: [386390]
  Other proteins in same PDB: d6umse_
  automated match to d1j7db_
Domain(s) for 7bbd:
- Domain d7bbdc1: 7bbd C:1-152 [398433]
  Other proteins in same PDB: d7bbda1, d7bbda2, d7bbdc2, d7bbdd_
  automated match to d2c2vb_
  complexed with zn
Domain(s) for 7bbf:
1. Domain d7bbfa_: 7bbf A: [398421]
  Other proteins in same PDB: d7bbfb_, d7bbfc_, d7bbfe_, d7bbff_, d7bbfh_, d7bbfi_
  automated match to d2c2vb_
2. Domain d7bbfd_: 7bbf D: [398384]
  Other proteins in same PDB: d7bbfb_, d7bbfc_, d7bbfe_, d7bbff_, d7bbfh_, d7bbfi_
  automated match to d2c2vb_
3. Domain d7bbfg_: 7bbf G: [398409]
  Other proteins in same PDB: d7bbfb_, d7bbfc_, d7bbfe_, d7bbff_, d7bbfh_, d7bbfi_
  automated match to d2c2vb_
Domain(s) for 7bxg:
- Domain d7bxgb_: 7bxg B: [385754]
  Other proteins in same PDB: d7bxgd_
  automated match to d3w31b_

More info for Species Human (Homo sapiens), ubc13 [TaxId:9606] from d.20.1.1 Ubiquitin conjugating enzyme, UBC

Timeline for Species Human (Homo sapiens), ubc13 [TaxId:9606] from d.20.1.1 Ubiquitin conjugating enzyme, UBC:

Species Human (Homo sapiens), ubc13 [TaxId:9606] from d.20.1.1 Ubiquitin conjugating enzyme, UBC first appeared in SCOP 1.57, called Species Human (Homo sapiens), ubc13 [TaxId:9606] from d.20.1.1 Ubiquitin conjugating enzyme
Species Human (Homo sapiens), ubc13 [TaxId:9606] from d.20.1.1 Ubiquitin conjugating enzyme, UBC appears in SCOPe 2.07