Lineage for Species: Human (Homo sapiens), ubc13 [TaxId: 9606]

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. Family d.20.1.1: UBC-related [54496] (7 proteins)
  6. Protein Ubiquitin conjugating enzyme, UBC [54497] (34 species)
  7. Species Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (23 PDB entries)

PDB entries in Species: Human (Homo sapiens), ubc13 [TaxId: 9606]:

  1. Domain(s) for 1j7d:
  2. Domain(s) for 2c2v:
    1. Domain d2c2vb2: 2c2v B:6-156 [129686]
      Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
      automated match to d1j7db_
    2. Domain d2c2ve_: 2c2v E: [129688]
      Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
      automated match to d1j7db_
    3. Domain d2c2vh_: 2c2v H: [129690]
      Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
      automated match to d1j7db_
    4. Domain d2c2vk2: 2c2v K:6-156 [129692]
      Other proteins in same PDB: d2c2vb3, d2c2vk3, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
      automated match to d1j7db_
  3. Domain(s) for 3w31:
  4. Domain(s) for 4dhi:
  5. Domain(s) for 4dhj:
    1. Domain d4dhjc_: 4dhj C: [201702]
      Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
      automated match to d1j7db_
    2. Domain d4dhjg_: 4dhj G: [201705]
      Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
      automated match to d1j7db_
    3. Domain d4dhjk_: 4dhj K: [196008]
      Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
      automated match to d2c2vb_
    4. Domain d4dhjn_: 4dhj N: [201709]
      Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
      automated match to d1j7db_
  6. Domain(s) for 4dhz:
  7. Domain(s) for 4tkp:
  8. Domain(s) for 5eya:
    1. Domain d5eyaa_: 5eya A: [321262]
      Other proteins in same PDB: d5eyac_, d5eyad_
      automated match to d3w31b_
      complexed with zn
    2. Domain d5eyab_: 5eya B: [321269]
      Other proteins in same PDB: d5eyac_, d5eyad_
      automated match to d3w31b_
      complexed with zn
  9. Domain(s) for 5ywr:
  10. Domain(s) for 6d6i:
    1. Domain d6d6ib_: 6d6i B: [369631]
      Other proteins in same PDB: d6d6ic_, d6d6if_
      automated match to d2c2vb_
    2. Domain d6d6ie_: 6d6i E: [369659]
      Other proteins in same PDB: d6d6ic_, d6d6if_
      automated match to d2c2vb_
  11. Domain(s) for 6jky:
    1. Domain d6jkyb_: 6jky B: [378275]
      Other proteins in same PDB: d6jkyc1, d6jkyc2, d6jkyf1, d6jkyf2
      automated match to d3w31b_
    2. Domain d6jkye_: 6jky E: [378244]
      Other proteins in same PDB: d6jkyc1, d6jkyc2, d6jkyf1, d6jkyf2
      automated match to d3w31b_
  12. Domain(s) for 6kfp:
  13. Domain(s) for 6kg6:
  14. Domain(s) for 6kl4:
  15. Domain(s) for 6lp2:
  16. Domain(s) for 6p5b:
  17. Domain(s) for 6s53:
    1. Domain d6s53c_: 6s53 C: [374050]
      Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
      automated match to d3w31b_
      complexed with mpd, zn
    2. Domain d6s53e_: 6s53 E: [374063]
      Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
      automated match to d3w31b_
      complexed with mpd, zn
    3. Domain d6s53i_: 6s53 I: [374042]
      Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
      automated match to d3w31b_
      complexed with mpd, zn
    4. Domain d6s53k_: 6s53 K: [374057]
      Other proteins in same PDB: d6s53d_, d6s53f_, d6s53j_, d6s53l_
      automated match to d3w31b_
      complexed with mpd, zn
  18. Domain(s) for 6ulh:
  19. Domain(s) for 6ump:
  20. Domain(s) for 6ums:
  21. Domain(s) for 7bbd:
  22. Domain(s) for 7bbf:
    1. Domain d7bbfa_: 7bbf A: [398421]
      Other proteins in same PDB: d7bbfb_, d7bbfc_, d7bbfe_, d7bbff_, d7bbfh_, d7bbfi_
      automated match to d2c2vb_
    2. Domain d7bbfd_: 7bbf D: [398384]
      Other proteins in same PDB: d7bbfb_, d7bbfc_, d7bbfe_, d7bbff_, d7bbfh_, d7bbfi_
      automated match to d2c2vb_
    3. Domain d7bbfg_: 7bbf G: [398409]
      Other proteins in same PDB: d7bbfb_, d7bbfc_, d7bbfe_, d7bbff_, d7bbfh_, d7bbfi_
      automated match to d2c2vb_
  23. Domain(s) for 7bxg:

More info for Species Human (Homo sapiens), ubc13 [TaxId:9606] from d.20.1.1 Ubiquitin conjugating enzyme, UBC

Timeline for Species Human (Homo sapiens), ubc13 [TaxId:9606] from d.20.1.1 Ubiquitin conjugating enzyme, UBC: