SCOP 1.73: Protein: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)

Lineage for Protein: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)

Root: SCOP 1.73
Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (15 families)
Family c.68.1.13: Cytidylytransferase [68901] (6 proteins)
Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140] (4 species)

Species:

Escherichia coli [TaxId:562] [64141] (6 PDB entries)
1. Domains for 1h3m:
  1. Domain d1h3ma_: 1h3m A: [90600]
  2. Domain d1h3mb_: 1h3m B: [90601]
    complexed with cl, n2p; mutant
2. Domain for 1i52:
  - Domain d1i52a_: 1i52 A: [61767]
    complexed with ca, ctp, mg
3. Domain for 1ini:
  - Domain d1inia_: 1ini A: [66219]
    complexed with cdm, mg
4. Domain for 1inj:
  - Domain d1inja_: 1inj A: [62607]
    complexed with ca
5. Domains for 1vgt:
  1. Domain d1vgta_: 1vgt A: [100604]
  2. Domain d1vgtb_: 1vgt B: [100605]
    structural genomics
6. Domains for 1vgu:
  1. Domain d1vgua_: 1vgu A: [100606]
  2. Domain d1vgub_: 1vgu B: [100607]
    structural genomics
Neisseria gonorrhoeae [TaxId:485] [102605] (2 PDB entries)
1. Domains for 1vgw:
  1. Domain d1vgwa_: 1vgw A: [100612]
  2. Domain d1vgwb_: 1vgw B: [100613]
  3. Domain d1vgwc_: 1vgw C: [100614]
  4. Domain d1vgwd_: 1vgw D: [100615]
  5. Domain d1vgwe_: 1vgw E: [100616]
  6. Domain d1vgwf_: 1vgw F: [100617]
    structural genomics
2. Domains for 1vgz:
  1. Domain d1vgza_: 1vgz A: [100624]
  2. Domain d1vgzb_: 1vgz B: [100625]
    structural genomics
    complexed with so4
Thale cress (Arabidopsis thaliana), chloroplast [TaxId:3702] [142690] (1 PDB entry)
- Domain for 1w77:
  - Domain d1w77a1: 1w77 A:75-300 [120679]
    complexed with c5p, cd, cu; mutant
Thermotoga maritima [TaxId:2336] [117699] (1 PDB entry)
- Domains for 1vpa:
  1. Domain d1vpaa_: 1vpa A: [113948]
  2. Domain d1vpab_: 1vpa B: [113949]
    Structural genomics target
    complexed with acy, ctp, mg

More info for Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) from c.68.1.13: Cytidylytransferase

Timeline for Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) from c.68.1.13: Cytidylytransferase:

Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) from c.68.1.13: Cytidylytransferase first appeared in SCOP 1.57, called Protein 4-diphosphocytidyl-2-c-methylerythritol (CDP-me) synthase (YgbP) from c.68.1.11: 4-diphosphocytidyl-2-c-methylerythritol (CDP-me) synthase (YgbP)
Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) from c.68.1.13: Cytidylytransferase appears in SCOP 1.71
Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) from c.68.1.13: Cytidylytransferase appears in SCOP 1.75
Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) from c.68.1.13: Cytidylytransferase appears in the current release, SCOPe 2.08