Lineage for Protein: Methionine gamma-lyase, MGL

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2470823Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2470824Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2471297Family c.67.1.3: Cystathionine synthase-like [53402] (17 protein domains)
  6. 2471448Protein Methionine gamma-lyase, MGL [64126] (4 species)

Species:

  1. 2471449Citrobacter freundii [TaxId:546] [142663] (9 PDB entries)
    Uniprot Q84AR1 2-398
    1. Domain for 1y4i:
    2. Domain for 2rfv:
    3. Domain for 3jw9:
    4. Domain for 3jwa:
    5. Domain for 3jwb:
    6. Domain for 3mkj:
    7. Domain for 4hf8:
    8. Domain for 4mkj:
    9. Domain for 4mkk:
  2. 2471459Pseudomonas putida [TaxId:303] [75271] (13 PDB entries)
    Uniprot P13254
    1. Domains for 1gc0:
      1. 2471460Domain d1gc0a_: 1gc0 A: [70168]
      2. 2471461Domain d1gc0b_: 1gc0 B: [70169]
      3. 2471462Domain d1gc0c_: 1gc0 C: [70170]
      4. 2471463Domain d1gc0d_: 1gc0 D: [70171]
    2. Domains for 1gc2:
      1. 2471468Domain d1gc2a_: 1gc2 A: [70172]
      2. 2471469Domain d1gc2b_: 1gc2 B: [70173]
      3. 2471470Domain d1gc2c_: 1gc2 C: [70174]
      4. 2471471Domain d1gc2d_: 1gc2 D: [70175]
    3. Domains for 1pg8:
      1. 2471496Domain d1pg8a_: 1pg8 A: [104150]
        complexed with peg, plp, so4
      2. 2471497Domain d1pg8b_: 1pg8 B: [104151]
        complexed with peg, plp, so4
      3. 2471498Domain d1pg8c_: 1pg8 C: [104152]
        complexed with peg, plp, so4
      4. 2471499Domain d1pg8d_: 1pg8 D: [104153]
        complexed with peg, plp, so4
    4. Domains for 1ukj:
      1. 2471464Domain d1ukja_: 1ukj A: [113259]
        complexed with so4
      2. 2471465Domain d1ukjb_: 1ukj B: [113260]
        complexed with so4
      3. 2471466Domain d1ukjc_: 1ukj C: [113261]
        complexed with so4
      4. 2471467Domain d1ukjd_: 1ukj D: [113262]
        complexed with so4
    5. Domains for 3vk2:
      1. 2471488Domain d3vk2a_: 3vk2 A: [194670]
        automated match to d1ukja_
        complexed with so4; mutant
      2. 2471489Domain d3vk2b_: 3vk2 B: [194669]
        automated match to d1ukja_
        complexed with so4; mutant
      3. 2471490Domain d3vk2c_: 3vk2 C: [194668]
        automated match to d1ukja_
        complexed with so4; mutant
      4. 2471491Domain d3vk2d_: 3vk2 D: [194671]
        automated match to d1ukja_
        complexed with so4; mutant
    6. Domains for 3vk3:
      1. 2471472Domain d3vk3a_: 3vk3 A: [194675]
        automated match to d1ukja_
        complexed with met; mutant
      2. 2471473Domain d3vk3b_: 3vk3 B: [194673]
        automated match to d1ukja_
        complexed with met; mutant
      3. 2471474Domain d3vk3c_: 3vk3 C: [194672]
        automated match to d1ukja_
        complexed with met; mutant
      4. 2471475Domain d3vk3d_: 3vk3 D: [194674]
        automated match to d1ukja_
        complexed with met; mutant
    7. Domains for 3vk4:
      1. 2471500Domain d3vk4a_: 3vk4 A: [194665]
        automated match to d1ukja_
        complexed with hcs; mutant
      2. 2471501Domain d3vk4b_: 3vk4 B: [194666]
        automated match to d1ukja_
        complexed with hcs; mutant
      3. 2471502Domain d3vk4c_: 3vk4 C: [194664]
        automated match to d1ukja_
        complexed with hcs; mutant
      4. 2471503Domain d3vk4d_: 3vk4 D: [194667]
        automated match to d1ukja_
        complexed with hcs; mutant
    8. Domains for 5x2v:
      1. 2471504Domain d5x2va_: 5x2v A: [333145]
        automated match to d1gc0a_
      2. 2471505Domain d5x2vb_: 5x2v B: [333054]
        automated match to d1gc0a_
      3. 2471506Domain d5x2vc_: 5x2v C: [333123]
        automated match to d1gc0a_
      4. 2471507Domain d5x2vd_: 5x2v D: [333129]
        automated match to d1ukja_
    9. Domains for 5x2w:
      1. 2471508Domain d5x2wa_: 5x2w A: [333147]
        automated match to d1gc0a_
        complexed with 3lm
      2. 2471509Domain d5x2wb_: 5x2w B: [333095]
        automated match to d1gc0a_
        complexed with 3lm
      3. 2471510Domain d5x2wc_: 5x2w C: [333125]
        automated match to d1gc0a_
        complexed with 3lm
      4. 2471511Domain d5x2wd_: 5x2w D: [333150]
        automated match to d1ukja_
        complexed with 3lm
    10. Domains for 5x2x:
      1. 2471492Domain d5x2xa_: 5x2x A: [333127]
        automated match to d1gc0a_
        complexed with 4lm, h2s
      2. 2471493Domain d5x2xb_: 5x2x B: [333146]
        automated match to d1gc0a_
        complexed with 4lm, h2s
      3. 2471494Domain d5x2xc_: 5x2x C: [333124]
        automated match to d1gc0a_
        complexed with 4lm, h2s
      4. 2471495Domain d5x2xd_: 5x2x D: [333158]
        automated match to d1ukja_
        complexed with 4lm, h2s
    11. Domains for 5x2y:
      1. 2471480Domain d5x2ya_: 5x2y A: [333156]
        automated match to d1ukja_
        mutant
      2. 2471481Domain d5x2yb_: 5x2y B: [333159]
        automated match to d1ukja_
        mutant
      3. 2471482Domain d5x2yc_: 5x2y C: [333144]
        automated match to d1ukja_
        mutant
      4. 2471483Domain d5x2yd_: 5x2y D: [333126]
        automated match to d1ukja_
        mutant
    12. Domains for 5x2z:
      1. 2471484Domain d5x2za_: 5x2z A: [333053]
        automated match to d1ukja_
        complexed with 3lm; mutant
      2. 2471485Domain d5x2zb_: 5x2z B: [333151]
        automated match to d1ukja_
        complexed with 3lm; mutant
      3. 2471486Domain d5x2zc_: 5x2z C: [333069]
        automated match to d1ukja_
        complexed with 3lm; mutant
      4. 2471487Domain d5x2zd_: 5x2z D: [333136]
        automated match to d1ukja_
        complexed with 3lm; mutant
    13. Domains for 5x30:
      1. 2471476Domain d5x30a_: 5x30 A: [333051]
        automated match to d1ukja_
        complexed with 4lm, 7xf, h2s, hcs; mutant
      2. 2471477Domain d5x30b_: 5x30 B: [333128]
        automated match to d1ukja_
        complexed with 4lm, 7xf, h2s, hcs; mutant
      3. 2471478Domain d5x30c_: 5x30 C: [333110]
        automated match to d1ukja_
        complexed with 4lm, 7xf, h2s, hcs; mutant
      4. 2471479Domain d5x30d_: 5x30 D: [333153]
        automated match to d1ukja_
        complexed with 4lm, 7xf, h2s, hcs; mutant
  3. 2471512Trichomonas vaginalis, MGL1 [TaxId:5722] [64127] (2 PDB entries)
    1. Domains for 1e5e:
      1. 2471515Domain d1e5ea_: 1e5e A: [59265]
        complexed with gol, ppj, so4
      2. 2471516Domain d1e5eb_: 1e5e B: [59266]
        complexed with gol, ppj, so4
    2. Domains for 1e5f:
      1. 2471513Domain d1e5fa_: 1e5f A: [59267]
        complexed with gol, plp, so4
      2. 2471514Domain d1e5fb_: 1e5f B: [59268]
        complexed with gol, plp, so4
  4. 2471517Trichomonas vaginalis, MGL2 [TaxId:5722] [110683] (1 PDB entry)
    Uniprot O15565

More info for Protein Methionine gamma-lyase, MGL from c.67.1.3: Cystathionine synthase-like

Timeline for Protein Methionine gamma-lyase, MGL from c.67.1.3: Cystathionine synthase-like: