SCOPe 2.01: Protein: Membrane fusion ATPase VCP/p97

Lineage for Protein: Membrane fusion ATPase VCP/p97

Root: SCOPe 2.01
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
division into families based on beta-sheet topologies
Family c.37.1.20: Extended AAA-ATPase domain [81269] (29 proteins)
fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain
Protein Membrane fusion ATPase VCP/p97 [64038] (1 species)

Species:

Mouse (Mus musculus) [TaxId:10090] [64039] (4 PDB entries)

Domain for 1e32:
- Domain d1e32a2: 1e32 A:201-458 [59184]
  Other proteins in same PDB: d1e32a1, d1e32a3
  D1 domain from the N-D1 fragment
  complexed with adp
Domains for 1r7r:
1. Domain d1r7ra2: 1r7r A:201-470 [97204]
  Other proteins in same PDB: d1r7ra1, d1r7ra4
  complexed with adp
2. Domain d1r7ra3: 1r7r A:471-735 [97205]
  Other proteins in same PDB: d1r7ra1, d1r7ra4
  complexed with adp

Domains for 1s3s:

Domain d1s3sa2: 1s3s A:201-458 [98440]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sb2: 1s3s B:201-458 [98443]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sc2: 1s3s C:201-458 [98446]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sd2: 1s3s D:201-458 [98449]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3se2: 1s3s E:201-458 [98452]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sf2: 1s3s F:201-458 [98455]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domains for 3cf1:
1. Domain d3cf1a2: 3cf1 A:201-470 [173177]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
2. Domain d3cf1a3: 3cf1 A:471-763 [173178]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
3. Domain d3cf1b2: 3cf1 B:201-470 [173181]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
4. Domain d3cf1b3: 3cf1 B:471-763 [173182]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
5. Domain d3cf1c2: 3cf1 C:201-470 [173185]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
6. Domain d3cf1c3: 3cf1 C:471-763 [173186]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3

More info for Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain

Timeline for Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain:

Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain first appeared in SCOP 1.57, called Protein Membrane fusion atpase p97, D1 domain from c.37.1.13: Extended AAA-ATPase domain
Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain appears in SCOP 1.75
Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain appears in SCOPe 2.02
Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain appears in the current release, SCOPe 2.08