SCOPe 2.08: Species: Rhodospirillum rubrum [TaxId: 1085]

Lineage for Species: Rhodospirillum rubrum [TaxId: 1085]

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)
Family c.2.1.4: Formate/glycerate dehydrogenases, NAD-domain [51830] (10 proteins)
this domain interrupts the other domain which defines family
Protein Nicotinamide nucleotide transhydrogenase dI component [63937] (1 species)
L-alanine dehydrogenase homologue
Species Rhodospirillum rubrum [TaxId:1085] [63938] (15 PDB entries)

PDB entries in Species: Rhodospirillum rubrum [TaxId: 1085]:

Domain(s) for 1f8g:
1. Domain d1f8ga1: 1f8g A:144-326 [59695]
  Other proteins in same PDB: d1f8ga2, d1f8gb2, d1f8gc2, d1f8gd2
  complexed with nad
2. Domain d1f8gb1: 1f8g B:144-326 [59697]
  Other proteins in same PDB: d1f8ga2, d1f8gb2, d1f8gc2, d1f8gd2
  complexed with nad
3. Domain d1f8gc1: 1f8g C:144-326 [59699]
  Other proteins in same PDB: d1f8ga2, d1f8gb2, d1f8gc2, d1f8gd2
  complexed with nad
4. Domain d1f8gd1: 1f8g D:144-326 [59701]
  Other proteins in same PDB: d1f8ga2, d1f8gb2, d1f8gc2, d1f8gd2
  complexed with nad
Domain(s) for 1hzz:
1. Domain d1hzza1: 1hzz A:144-326 [61470]
  Other proteins in same PDB: d1hzza2, d1hzzb2, d1hzzc_
  complexed with dIII component
  complexed with nad, nap
2. Domain d1hzzb1: 1hzz B:144-326 [61472]
  Other proteins in same PDB: d1hzza2, d1hzzb2, d1hzzc_
  complexed with dIII component
  complexed with nad, nap
Domain(s) for 1l7d:
1. Domain d1l7da1: 1l7d A:144-326 [77774]
  Other proteins in same PDB: d1l7da2, d1l7db2, d1l7dc2, d1l7dd2
2. Domain d1l7db1: 1l7d B:544-726 [77776]
  Other proteins in same PDB: d1l7da2, d1l7db2, d1l7dc2, d1l7dd2
3. Domain d1l7dc1: 1l7d C:944-1126 [77778]
  Other proteins in same PDB: d1l7da2, d1l7db2, d1l7dc2, d1l7dd2
4. Domain d1l7dd1: 1l7d D:1344-1526 [77780]
  Other proteins in same PDB: d1l7da2, d1l7db2, d1l7dc2, d1l7dd2
Domain(s) for 1l7e:
1. Domain d1l7ea1: 1l7e A:144-326 [77782]
  Other proteins in same PDB: d1l7ea2, d1l7eb2, d1l7ec2, d1l7ed2
  complexed with nai
2. Domain d1l7eb1: 1l7e B:544-726 [77784]
  Other proteins in same PDB: d1l7ea2, d1l7eb2, d1l7ec2, d1l7ed2
  complexed with nai
3. Domain d1l7ec1: 1l7e C:944-1126 [77786]
  Other proteins in same PDB: d1l7ea2, d1l7eb2, d1l7ec2, d1l7ed2
  complexed with nai
4. Domain d1l7ed1: 1l7e D:1344-1526 [77788]
  Other proteins in same PDB: d1l7ea2, d1l7eb2, d1l7ec2, d1l7ed2
  complexed with nai
Domain(s) for 1nm5:
1. Domain d1nm5a1: 1nm5 A:144-326 [91968]
  Other proteins in same PDB: d1nm5a2, d1nm5b2, d1nm5c_
  complexed with dIII component
  complexed with gol, nad, nap
2. Domain d1nm5b1: 1nm5 B:144-326 [91970]
  Other proteins in same PDB: d1nm5a2, d1nm5b2, d1nm5c_
  complexed with dIII component
  complexed with gol, nad, nap
Domain(s) for 1ptj:
1. Domain d1ptja1: 1ptj A:144-326 [95099]
  Other proteins in same PDB: d1ptja2, d1ptjb2, d1ptjc_
  complexed with dIII component
  complexed with gol, nap, snd
2. Domain d1ptjb1: 1ptj B:144-326 [95101]
  Other proteins in same PDB: d1ptja2, d1ptjb2, d1ptjc_
  complexed with dIII component
  complexed with gol, nap, snd
Domain(s) for 1u28:
1. Domain d1u28a1: 1u28 A:144-326 [119468]
  Other proteins in same PDB: d1u28a2, d1u28b2, d1u28c_
  automated match to d1l7db1
  complexed with gol, nad, nap
2. Domain d1u28b1: 1u28 B:144-326 [119470]
  Other proteins in same PDB: d1u28a2, d1u28b2, d1u28c_
  automated match to d1l7db1
  complexed with gol, nad, nap
Domain(s) for 1u2d:
1. Domain d1u2da1: 1u2d A:144-326 [119475]
  Other proteins in same PDB: d1u2da2, d1u2db2, d1u2dc_
  automatically matched to d1f8ga1
  complexed with gol, nad, ndp
2. Domain d1u2db1: 1u2d B:144-326 [119477]
  Other proteins in same PDB: d1u2da2, d1u2db2, d1u2dc_
  automatically matched to d1f8ga1
  complexed with gol, nad, ndp
Domain(s) for 1u2g:
1. Domain d1u2ga1: 1u2g A:144-326 [119480]
  Other proteins in same PDB: d1u2ga2, d1u2gb2, d1u2gc_
  automated match to d1l7db1
  complexed with apr, gol, ndp
2. Domain d1u2gb1: 1u2g B:144-326 [119482]
  Other proteins in same PDB: d1u2ga2, d1u2gb2, d1u2gc_
  automated match to d1l7db1
  complexed with apr, gol, ndp

Domain(s) for 1xlt:

Domain d1xlta1: 1xlt A:144-326 [122122]
Other proteins in same PDB: d1xlta2, d1xltb2, d1xltc2, d1xltc3, d1xltd2, d1xlte2, d1xltf2, d1xltf3, d1xltg2, d1xlth2, d1xlti2, d1xlti3
automatically matched to d1f8ga1
complexed with na, nad, ndp

Domain d1xltb1: 1xlt B:144-326 [122124]
Other proteins in same PDB: d1xlta2, d1xltb2, d1xltc2, d1xltc3, d1xltd2, d1xlte2, d1xltf2, d1xltf3, d1xltg2, d1xlth2, d1xlti2, d1xlti3
automatically matched to d1f8ga1
complexed with na, nad, ndp

Domain d1xltd1: 1xlt D:144-326 [122127]
Other proteins in same PDB: d1xlta2, d1xltb2, d1xltc2, d1xltc3, d1xltd2, d1xlte2, d1xltf2, d1xltf3, d1xltg2, d1xlth2, d1xlti2, d1xlti3
automatically matched to d1f8ga1
complexed with na, nad, ndp

Domain d1xlte1: 1xlt E:144-326 [122129]
Other proteins in same PDB: d1xlta2, d1xltb2, d1xltc2, d1xltc3, d1xltd2, d1xlte2, d1xltf2, d1xltf3, d1xltg2, d1xlth2, d1xlti2, d1xlti3
automatically matched to d1f8ga1
complexed with na, nad, ndp

Domain d1xltg1: 1xlt G:144-326 [122132]
Other proteins in same PDB: d1xlta2, d1xltb2, d1xltc2, d1xltc3, d1xltd2, d1xlte2, d1xltf2, d1xltf3, d1xltg2, d1xlth2, d1xlti2, d1xlti3
automatically matched to d1f8ga1
complexed with na, nad, ndp

Domain d1xlth1: 1xlt H:144-326 [122134]
Other proteins in same PDB: d1xlta2, d1xltb2, d1xltc2, d1xltc3, d1xltd2, d1xlte2, d1xltf2, d1xltf3, d1xltg2, d1xlth2, d1xlti2, d1xlti3
automatically matched to d1f8ga1
complexed with na, nad, ndp

Domain(s) for 2fr8:
1. Domain d2fr8a1: 2fr8 A:144-326 [133973]
  Other proteins in same PDB: d2fr8a2, d2fr8b2, d2fr8c_
  automatically matched to d1f8ga1
  complexed with nad, nap
2. Domain d2fr8b1: 2fr8 B:144-326 [133975]
  Other proteins in same PDB: d2fr8a2, d2fr8b2, d2fr8c_
  automatically matched to d1f8ga1
  complexed with nad, nap
Domain(s) for 2frd:
1. Domain d2frda1: 2frd A:144-326 [133980]
  Other proteins in same PDB: d2frda2, d2frdb2, d2frdc1
  automatically matched to d1f8ga1
  complexed with nai, ndp
2. Domain d2frdb1: 2frd B:144-326 [133982]
  Other proteins in same PDB: d2frda2, d2frdb2, d2frdc1
  automatically matched to d1f8ga1
  complexed with nai, ndp
Domain(s) for 2fsv:
1. Domain d2fsva1: 2fsv A:144-326 [134037]
  Other proteins in same PDB: d2fsva2, d2fsvb2, d2fsvc1
  automatically matched to d1f8ga1
  complexed with gol, nad, nap
2. Domain d2fsvb1: 2fsv B:144-326 [134039]
  Other proteins in same PDB: d2fsva2, d2fsvb2, d2fsvc1
  automatically matched to d1f8ga1
  complexed with gol, nad, nap
Domain(s) for 2oo5:
1. Domain d2oo5a1: 2oo5 A:144-326 [139162]
  Other proteins in same PDB: d2oo5a2, d2oo5b2, d2oo5c_
  automated match to d1l7db1
  complexed with nap, so4, txd
2. Domain d2oo5b1: 2oo5 B:144-326 [139164]
  Other proteins in same PDB: d2oo5a2, d2oo5b2, d2oo5c_
  automated match to d1l7db1
  complexed with nap, so4, txd
Domain(s) for 2oor:
1. Domain d2oora1: 2oor A:144-326 [139171]
  Other proteins in same PDB: d2oora2, d2oorb2, d2oorc_
  automated match to d1l7db1
  complexed with gol, nad, txp
2. Domain d2oorb1: 2oor B:144-326 [139173]
  Other proteins in same PDB: d2oora2, d2oorb2, d2oorc_
  automated match to d1l7db1
  complexed with gol, nad, txp

More info for Species Rhodospirillum rubrum [TaxId:1085] from c.2.1.4 Nicotinamide nucleotide transhydrogenase dI component

Timeline for Species Rhodospirillum rubrum [TaxId:1085] from c.2.1.4 Nicotinamide nucleotide transhydrogenase dI component:

Species Rhodospirillum rubrum [TaxId:1085] from c.2.1.4 Nicotinamide nucleotide transhydrogenase dI component first appeared in SCOP 1.57
Species Rhodospirillum rubrum [TaxId:1085] from c.2.1.4 Nicotinamide nucleotide transhydrogenase dI component appears in SCOPe 2.07