SCOPe 2.04: Protein: Archaeal homoheptameric Sm protein

Lineage for Protein: Archaeal homoheptameric Sm protein

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.38: Sm-like fold [50181] (5 superfamilies)
core: barrel, open; n*=4, S*=8; meander; SH3-like topology
Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families)
Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (8 proteins)
forms homo and heteroheptameric ring structures
Protein Archaeal homoheptameric Sm protein [63758] (6 species)

Species:

Archaeoglobus fulgidus, AF-Sm1 [TaxId:2234] [63761] (2 PDB entries)
1. Domains for 1i4k:
  1. Domain d1i4k1_: 1i4k 1: [61690]
    complexed with cit
  2. Domain d1i4k2_: 1i4k 2: [61691]
    complexed with cit
  3. Domain d1i4ka_: 1i4k A: [61692]
    complexed with cit
  4. Domain d1i4kb_: 1i4k B: [61693]
    complexed with cit
  5. Domain d1i4kc_: 1i4k C: [61694]
    complexed with cit
  6. Domain d1i4kd_: 1i4k D: [61695]
    complexed with cit
  7. Domain d1i4ke_: 1i4k E: [61696]
    complexed with cit
  8. Domain d1i4kf_: 1i4k F: [61697]
    complexed with cit
  9. Domain d1i4kg_: 1i4k G: [61698]
    complexed with cit
  10. Domain d1i4kh_: 1i4k H: [61699]
    complexed with cit
  11. Domain d1i4ki_: 1i4k I: [61700]
    complexed with cit
  12. Domain d1i4kj_: 1i4k J: [61701]
    complexed with cit
  13. Domain d1i4kk_: 1i4k K: [61702]
    complexed with cit
  14. Domain d1i4kl_: 1i4k L: [61703]
    complexed with cit
  15. Domain d1i4km_: 1i4k M: [61704]
    complexed with cit
  16. Domain d1i4kn_: 1i4k N: [61705]
    complexed with cit
  17. Domain d1i4ko_: 1i4k O: [61706]
    complexed with cit
  18. Domain d1i4kp_: 1i4k P: [61707]
    complexed with cit
  19. Domain d1i4kq_: 1i4k Q: [61708]
    complexed with cit
  20. Domain d1i4kr_: 1i4k R: [61709]
    complexed with cit
  21. Domain d1i4ks_: 1i4k S: [61710]
    complexed with cit
  22. Domain d1i4kt_: 1i4k T: [61711]
    complexed with cit
  23. Domain d1i4ku_: 1i4k U: [61712]
    complexed with cit
  24. Domain d1i4kv_: 1i4k V: [61713]
    complexed with cit
  25. Domain d1i4kw_: 1i4k W: [61714]
    complexed with cit
  26. Domain d1i4kx_: 1i4k X: [61715]
    complexed with cit
  27. Domain d1i4ky_: 1i4k Y: [61716]
    complexed with cit
  28. Domain d1i4kz_: 1i4k Z: [61717]
    complexed with cit
2. Domains for 1i5l:
  1. Domain d1i5la_: 1i5l A: [61791]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  2. Domain d1i5lb_: 1i5l B: [61792]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  3. Domain d1i5lc_: 1i5l C: [61793]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  4. Domain d1i5ld_: 1i5l D: [61794]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  5. Domain d1i5le_: 1i5l E: [61795]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  6. Domain d1i5lf_: 1i5l F: [61796]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  7. Domain d1i5lg_: 1i5l G: [61797]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  8. Domain d1i5lh_: 1i5l H: [61798]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  9. Domain d1i5li_: 1i5l I: [61799]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  10. Domain d1i5lj_: 1i5l J: [61800]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  11. Domain d1i5lk_: 1i5l K: [61801]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  12. Domain d1i5ll_: 1i5l L: [61802]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  13. Domain d1i5lm_: 1i5l M: [61803]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
  14. Domain d1i5ln_: 1i5l N: [61804]
    complexed with short poly-U RNA
    protein/RNA complex; complexed with uri
Archaeoglobus fulgidus, AF-Sm2 [TaxId:2234] [74938] (1 PDB entry)
- Domain for 1ljo:
  - Domain d1ljoa_: 1ljo A: [73941]
    complexed with acy, cd
Methanobacterium thermoautotrophicum [TaxId:145262] [63759] (5 PDB entries)
MTH649, smap1
1. Domains for 1i81:
  1. Domain d1i81a_: 1i81 A: [61930]
  2. Domain d1i81b_: 1i81 B: [61931]
  3. Domain d1i81c_: 1i81 C: [61932]
  4. Domain d1i81d_: 1i81 D: [61933]
  5. Domain d1i81e_: 1i81 E: [61934]
  6. Domain d1i81f_: 1i81 F: [61935]
  7. Domain d1i81g_: 1i81 G: [61936]
2. Domains for 1jbm:
  1. Domain d1jbma_: 1jbm A: [84143]
    structural genomics
    complexed with acy, edo
  2. Domain d1jbmb_: 1jbm B: [84144]
    structural genomics
    complexed with acy, edo
  3. Domain d1jbmc_: 1jbm C: [84145]
    structural genomics
    complexed with acy, edo
  4. Domain d1jbmd_: 1jbm D: [84146]
    structural genomics
    complexed with acy, edo
  5. Domain d1jbme_: 1jbm E: [84147]
    structural genomics
    complexed with acy, edo
  6. Domain d1jbmf_: 1jbm F: [84148]
    structural genomics
    complexed with acy, edo
  7. Domain d1jbmg_: 1jbm G: [84149]
    structural genomics
    complexed with acy, edo
3. Domains for 1jri:
  1. Domain d1jria_: 1jri A: [67121]
    complexed with cl, edo
  2. Domain d1jrib_: 1jri B: [67122]
    complexed with cl, edo
  3. Domain d1jric_: 1jri C: [67123]
    complexed with cl, edo
  4. Domain d1jrid_: 1jri D: [67124]
    complexed with cl, edo
  5. Domain d1jrie_: 1jri E: [67125]
    complexed with cl, edo
  6. Domain d1jrif_: 1jri F: [67126]
    complexed with cl, edo
  7. Domain d1jrig_: 1jri G: [67127]
    complexed with cl, edo
  8. Domain d1jrih_: 1jri H: [67128]
    complexed with cl, edo
  9. Domain d1jrii_: 1jri I: [67129]
    complexed with cl, edo
  10. Domain d1jrij_: 1jri J: [67130]
    complexed with cl, edo
  11. Domain d1jrik_: 1jri K: [67131]
    complexed with cl, edo
  12. Domain d1jril_: 1jri L: [67132]
    complexed with cl, edo
  13. Domain d1jrim_: 1jri M: [67133]
    complexed with cl, edo
  14. Domain d1jrin_: 1jri N: [67134]
    complexed with cl, edo
4. Domains for 1loj:
  1. Domain d1loja_: 1loj A: [84650]
    complexed with mpd, u, uri
  2. Domain d1lojb_: 1loj B: [84651]
    complexed with mpd, u, uri
  3. Domain d1lojc_: 1loj C: [84652]
    complexed with mpd, u, uri
  4. Domain d1lojd_: 1loj D: [84653]
    complexed with mpd, u, uri
  5. Domain d1loje_: 1loj E: [84654]
    complexed with mpd, u, uri
  6. Domain d1lojf_: 1loj F: [84655]
    complexed with mpd, u, uri
  7. Domain d1lojg_: 1loj G: [84656]
    complexed with mpd, u, uri
  8. Domain d1lojh_: 1loj H: [84657]
    complexed with mpd, u, uri
  9. Domain d1loji_: 1loj I: [84658]
    complexed with mpd, u, uri
  10. Domain d1lojj_: 1loj J: [84659]
    complexed with mpd, u, uri
  11. Domain d1lojk_: 1loj K: [84660]
    complexed with mpd, u, uri
  12. Domain d1lojl_: 1loj L: [84661]
    complexed with mpd, u, uri
  13. Domain d1lojm_: 1loj M: [84662]
    complexed with mpd, u, uri
  14. Domain d1lojn_: 1loj N: [84663]
    complexed with mpd, u, uri
5. Domains for 1mgq:
  1. Domain d1mgqa_: 1mgq A: [79099]
  2. Domain d1mgqb_: 1mgq B: [79100]
  3. Domain d1mgqc_: 1mgq C: [79101]
  4. Domain d1mgqd_: 1mgq D: [79102]
  5. Domain d1mgqe_: 1mgq E: [79103]
  6. Domain d1mgqf_: 1mgq F: [79104]
  7. Domain d1mgqg_: 1mgq G: [79105]
Pyrobaculum aerophilum [TaxId:13773] [63760] (2 PDB entries)
smap1
1. Domains for 1i8f:
  1. Domain d1i8fa_: 1i8f A: [61959]
    complexed with gol
  2. Domain d1i8fb_: 1i8f B: [61960]
    complexed with gol
  3. Domain d1i8fc_: 1i8f C: [61961]
    complexed with gol
  4. Domain d1i8fd_: 1i8f D: [61962]
    complexed with gol
  5. Domain d1i8fe_: 1i8f E: [61963]
    complexed with gol
  6. Domain d1i8ff_: 1i8f F: [61964]
    complexed with gol
  7. Domain d1i8fg_: 1i8f G: [61965]
    complexed with gol
2. Domains for 1lnx:
  1. Domain d1lnxa_: 1lnx A: [84642]
    complexed with acy, gol, uri
  2. Domain d1lnxb_: 1lnx B: [84643]
    complexed with acy, gol, uri
  3. Domain d1lnxc_: 1lnx C: [84644]
    complexed with acy, gol, uri
  4. Domain d1lnxd_: 1lnx D: [84645]
    complexed with acy, gol, uri
  5. Domain d1lnxe_: 1lnx E: [84646]
    complexed with acy, gol, uri
  6. Domain d1lnxf_: 1lnx F: [84647]
    complexed with acy, gol, uri
  7. Domain d1lnxg_: 1lnx G: [84648]
    complexed with acy, gol, uri
Pyrococcus abyssi [TaxId:29292] [82089] (2 PDB entries)
1. Domains for 1h64:
  1. Domain d1h641_: 1h64 1: [76675]
  2. Domain d1h642_: 1h64 2: [76676]
  3. Domain d1h64a_: 1h64 A: [76677]
  4. Domain d1h64b_: 1h64 B: [76678]
  5. Domain d1h64c_: 1h64 C: [76679]
  6. Domain d1h64d_: 1h64 D: [76680]
  7. Domain d1h64e_: 1h64 E: [76681]
  8. Domain d1h64f_: 1h64 F: [76682]
  9. Domain d1h64g_: 1h64 G: [76683]
  10. Domain d1h64h_: 1h64 H: [76684]
  11. Domain d1h64i_: 1h64 I: [76685]
  12. Domain d1h64j_: 1h64 J: [76686]
  13. Domain d1h64k_: 1h64 K: [76687]
  14. Domain d1h64l_: 1h64 L: [76688]
  15. Domain d1h64m_: 1h64 M: [76689]
  16. Domain d1h64n_: 1h64 N: [76690]
  17. Domain d1h64o_: 1h64 O: [76691]
  18. Domain d1h64p_: 1h64 P: [76692]
  19. Domain d1h64q_: 1h64 Q: [76693]
  20. Domain d1h64r_: 1h64 R: [76694]
  21. Domain d1h64s_: 1h64 S: [76695]
  22. Domain d1h64t_: 1h64 T: [76696]
  23. Domain d1h64u_: 1h64 U: [76697]
  24. Domain d1h64v_: 1h64 V: [76698]
  25. Domain d1h64w_: 1h64 W: [76699]
  26. Domain d1h64x_: 1h64 X: [76700]
  27. Domain d1h64y_: 1h64 Y: [76701]
  28. Domain d1h64z_: 1h64 Z: [76702]
2. Domains for 1m8v:
  1. Domain d1m8va_: 1m8v A: [78814]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  2. Domain d1m8vb_: 1m8v B: [78815]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  3. Domain d1m8vc_: 1m8v C: [78816]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  4. Domain d1m8vd_: 1m8v D: [78817]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  5. Domain d1m8ve_: 1m8v E: [78818]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  6. Domain d1m8vf_: 1m8v F: [78819]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  7. Domain d1m8vg_: 1m8v G: [78820]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  8. Domain d1m8vh_: 1m8v H: [78821]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  9. Domain d1m8vi_: 1m8v I: [78822]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  10. Domain d1m8vj_: 1m8v J: [78823]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  11. Domain d1m8vk_: 1m8v K: [78824]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  12. Domain d1m8vl_: 1m8v L: [78825]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  13. Domain d1m8vm_: 1m8v M: [78826]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
  14. Domain d1m8vn_: 1m8v N: [78827]
    complexed with a uridine heptamer
    protein/RNA complex; complexed with ca, u
Sulfolobus solfataricus [TaxId:2287] [141290] (1 PDB entry)
Uniprot Q97ZQ0 1-76
SnRNP-2
- Domains for 1th7:
  1. Domain d1th7a1: 1th7 A:3-78 [119264]
  2. Domain d1th7b_: 1th7 B: [119265]
    automated match to d1th7a1
  3. Domain d1th7c_: 1th7 C: [119266]
    automated match to d1th7a1
  4. Domain d1th7d_: 1th7 D: [119267]
    automated match to d1th7a1
  5. Domain d1th7e_: 1th7 E: [119268]
    automated match to d1th7a1
  6. Domain d1th7f_: 1th7 F: [119269]
    automated match to d1th7a1
  7. Domain d1th7g_: 1th7 G: [119270]
    automated match to d1th7a1
  8. Domain d1th7h_: 1th7 H: [119271]
    automated match to d1th7a1
  9. Domain d1th7i_: 1th7 I: [119272]
    automated match to d1th7a1
  10. Domain d1th7j_: 1th7 J: [119273]
    automated match to d1th7a1
  11. Domain d1th7k_: 1th7 K: [119274]
    automated match to d1th7a1
  12. Domain d1th7l_: 1th7 L: [119275]
    automated match to d1th7a1
  13. Domain d1th7m_: 1th7 M: [119276]
    automated match to d1th7a1
  14. Domain d1th7n_: 1th7 N: [119277]
    automated match to d1th7a1

More info for Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

Timeline for Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP:

Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP first appeared in SCOP 1.57
Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in SCOPe 2.03
Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in SCOPe 2.05
Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in the current release, SCOPe 2.08