SCOPe 2.05: Domain d1jsmb_: 1jsm B:

Lineage for d1jsmb_ (1jsm B:)

1. Root: SCOPe 2.05

2. Class h: Coiled coil proteins [57942] (7 folds)

3. Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
   core: trimeric coiled coil

4. Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families)

5. Family h.3.1.1: Influenza hemagglutinin (stalk) [58065] (2 proteins)

6. Protein Influenza hemagglutinin (stalk) [58066] (8 species)
   trimer

7. Species Influenza A virus, different strains [TaxId:11320] [58067] (109 PDB entries)

8. Domain d1jsmb_: 1jsm B: [63265]
   Other proteins in same PDB: d1jsma_
   complexed with nag

Details for d1jsmb_

PDB Entry: 1jsm, 1.9 Å

PDB Description: structure of h5 avian haemagglutinin

PDB Compounds: (B:) haemagglutinin (ha2 chain)

SCOPe Domain Sequences for d1jsmb_:

Sequence; same for both SEQRES and ATOM records:

>d1jsmb_ h.3.1.1 (B:) Influenza hemagglutinin (stalk) {Influenza A virus, different strains [TaxId: 11320]}
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgttnkvnsiidkmn
tqfeavgkefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydyp

Timeline for d1jsmb_:

• d1jsmb_ first appeared in SCOP 1.57
  
• d1jsmb_ appears in SCOPe 2.04
  
• d1jsmb_ appears in SCOPe 2.06
  
• d1jsmb_ appears in the current release, SCOPe 2.08