Lineage for d1j79b_ (1j79 B:)

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 681098Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 683612Superfamily c.1.9: Metallo-dependent hydrolases [51556] (15 families) (S)
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
  5. 683733Family c.1.9.4: Dihydroorotase [63917] (1 protein)
  6. 683734Protein Dihydroorotase [63918] (1 species)
  7. 683735Species Escherichia coli [TaxId:562] [63919] (2 PDB entries)
  8. 683737Domain d1j79b_: 1j79 B: [62676]
    complexed with ncd, oro, zn

Details for d1j79b_

PDB Entry: 1j79 (more details), 1.7 Å

PDB Description: Molecular Structure of Dihydroorotase: A Paradigm for Catalysis Through the Use of a Binuclear Metal Center
PDB Compounds: (B:) dihydroorotase

SCOP Domain Sequences for d1j79b_:

Sequence, based on SEQRES records: (download)

>d1j79b_ c.1.9.4 (B:) Dihydroorotase {Escherichia coli [TaxId: 562]}
sqvlkirrpddwhlhlrdgdmlktvvpytseiygraivmpnlappvttveaavayrqril
davpaphdftplmtcyltdsldpnelergfnegvftaaklypanattnsshgvtsvdaim
pvlermekigmpllvhgevthadidifdrearfiesvmeplrqrltalkvvfehittkda
adyvrdgnerlaatitpqhlmfnrnhmlvggvrphlyclpilkrnihqqalrelvasgfq
rvflgtdsapharhrkesscgcagcfnaptalgsyatvfeemnalqhfeafcsvngpqfy
glpvndtfielvreeqqvaesialtddtlvpflagetvrwsvk

Sequence, based on observed residues (ATOM records): (download)

>d1j79b_ c.1.9.4 (B:) Dihydroorotase {Escherichia coli [TaxId: 562]}
sqvlkirrpddwhlhlrdgdmlktvvpytseiygraivmpnlappvttveaavayrqril
davpaphdftplmtcyltdsldpnelergfnegvftaaklypanashgvtsvdaimpvle
rmekigmpllvhgevthadidifdrearfiesvmeplrqrltalkvvfehittkdaadyv
rdgnerlaatitpqhlmfnrnhmlvggvrphlyclpilkrnihqqalrelvasgfqrvfl
gtdsapharhrkesscgcagcfnaptalgsyatvfeemnalqhfeafcsvngpqfyglpv
ndtfielvreeqqvaesialtddtlvpflagetvrwsvk

SCOP Domain Coordinates for d1j79b_:

Click to download the PDB-style file with coordinates for d1j79b_.
(The format of our PDB-style files is described here.)

Timeline for d1j79b_: