Lineage for d1i7zb1 (1i7z B:9-113)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2739730Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2740454Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88554] (34 PDB entries)
    Uniprot P06327 20-117 # HV52_MOUSE (P06327) Ig heavy chain V region VH558 A1/A4 precursor; 57% sequence identity ! Uniprot P01631 # KV2G_MOUSE (P01631) Ig kappa chain V-II region 26-10
  8. 2740465Domain d1i7zb1: 1i7z B:9-113 [61921]
    Other proteins in same PDB: d1i7za1, d1i7za2, d1i7zb2, d1i7zb3, d1i7zc1, d1i7zc2, d1i7zd2, d1i7zd3
    part of humanized Fab GNC92H2
    complexed with coc

Details for d1i7zb1

PDB Entry: 1i7z (more details), 2.3 Å

PDB Description: antibody gnc92h2 bound to ligand
PDB Compounds: (B:) chimera of ig gamma-1 chain: human constant region and mouse variable region

SCOPe Domain Sequences for d1i7zb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1i7zb1 b.1.1.1 (B:9-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
pelkkpgetvkiscktsgysftnygmnwvkqapgkglkwmgwintytgeptyaddfrgrf
afslatsastaylqiinlknedtatyfcetydsplgdywgqgttvtvss

SCOPe Domain Coordinates for d1i7zb1:

Click to download the PDB-style file with coordinates for d1i7zb1.
(The format of our PDB-style files is described here.)

Timeline for d1i7zb1: