Lineage for d1g1ya3 (1g1y A:121-502)

  1. Root: SCOP 1.71
  2. 570216Class c: Alpha and beta proteins (a/b) [51349] (134 folds)
  3. 570217Fold c.1: TIM beta/alpha-barrel [51350] (32 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 571086Superfamily c.1.8: (Trans)glycosidases [51445] (13 families) (S)
  5. 571087Family c.1.8.1: Amylase, catalytic domain [51446] (24 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 571370Protein Maltogenic amylase, central domain [51465] (4 species)
    contains an additional N-terminal domain
  7. 571382Species Thermoactinomyces vulgaris, TVAII [TaxId:2026] [51467] (7 PDB entries)
  8. 571387Domain d1g1ya3: 1g1y A:121-502 [60212]
    Other proteins in same PDB: d1g1ya1, d1g1ya2, d1g1yb1, d1g1yb2

Details for d1g1ya3

PDB Entry: 1g1y (more details), 3 Å

PDB Description: crystal structure of alpha-amylase ii (tvaii) from thermoactinomyces vulgaris r-47 and beta-cyclodextrin complex

SCOP Domain Sequences for d1g1ya3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1g1ya3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII}
vfttpewakeaviyqifperfangdpsndppgteqwakdarprhdsfyggdlkgvidrlp
yleelgvtalyftpifaspshhkydtadylaidpqfgdlptfrrlvdeahrrgikiilda
vfnhagdqffafrdvlqkgeqsrykdwffiedfpvsktsrtnyetfavqvpampklrten
pevkeylfdvarfwmeqgidgwrldvanevdhafwrefrrlvkslnpdalivgaiwhdas
gwlmgdqfdsvmnylfresvirffatgeihaerfdaeltrarmlypeqaaqglwnlldsh
dterfltscggneakfrlavlfqmtylgtpliyygdeigmagatdpdcrrpmiweekeqn
rglfefykelirlrhrlasltr

SCOP Domain Coordinates for d1g1ya3:

Click to download the PDB-style file with coordinates for d1g1ya3.
(The format of our PDB-style files is described here.)

Timeline for d1g1ya3: