Lineage for d1fydb_ (1fyd B:)

  1. Root: SCOP 1.65
  2. 305035Class c: Alpha and beta proteins (a/b) [51349] (121 folds)
  3. 312145Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 312411Superfamily c.26.2: Adenine nucleotide alpha hydrolases-like [52402] (5 families) (S)
    share similar mode of ligand (Adenosine group) binding
    the first three families are more closely related to each other as the last two families are
  5. 312412Family c.26.2.1: N-type ATP pyrophosphatases [52403] (5 proteins)
  6. 312472Protein NH3-dependent NAD+-synthetase [52406] (1 species)
  7. 312473Species Bacillus subtilis [TaxId:1423] [52407] (7 PDB entries)
  8. 312485Domain d1fydb_: 1fyd B: [60114]
    complexed with amp, mg, pop

Details for d1fydb_

PDB Entry: 1fyd (more details), 2.25 Å

PDB Description: crystal structure of nh3-dependent nad+ synthetase from bacillus subtilis complexed with one molecule amp, one pyrophosphate ion and one mg2+ ion

SCOP Domain Sequences for d1fydb_:

Sequence, based on SEQRES records: (download)

>d1fydb_ c.26.2.1 (B:) NH3-dependent NAD+-synthetase {Bacillus subtilis}
smqekimrelhvkpsidpkqeiedrvnflkqyvkktgakgfvlgisggqdstlagrlaql
avesireeggdaqfiavrlphgtqqdeddaqlalkfikpdkswkfdikstvsafsdqyqq
etgdqltdfnkgnvkartrmiaqyaiggqegllvlgtdhaaeavtgfftkygdggadllp
ltgltkrqgrtllkelgaperlylkeptadlldekpqqsdetelgisydeiddylegkev
sakvsealekrysmtehkrqvpasmfddwwk

Sequence, based on observed residues (ATOM records): (download)

>d1fydb_ c.26.2.1 (B:) NH3-dependent NAD+-synthetase {Bacillus subtilis}
smqekimrelhvkpsidpkqeiedrvnflkqyvkktgakgfvlgisggqdstlagrlaql
avesireeggdaqfiavrlphgeddaqlalkfikpdkswkfdikstvsafsdqyqqetgd
qltdfnkgnvkartrmiaqyaiggqegllvlgtdhaaeavtgfftkygdggadllpltgl
tkrqgrtllkelgaperlylisydeiddylegkevsakvsealekrysmtehkrqvpasm
fddwwk

SCOP Domain Coordinates for d1fydb_:

Click to download the PDB-style file with coordinates for d1fydb_.
(The format of our PDB-style files is described here.)

Timeline for d1fydb_: