SCOPe 2.06: Domain d1bgyb1: 1bgy B:21-235

Lineage for d1bgyb1 (1bgy B:21-235)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.185: LuxS/MPP-like metallohydrolase [63410] (1 superfamily)
   core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta

4. Superfamily d.185.1: LuxS/MPP-like metallohydrolase [63411] (3 families)
   Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues

5. Family d.185.1.1: MPP-like [63412] (7 proteins)
   Common fold elaborated with many additional structures; duplication: each family member consists of two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)-beta structure, but only the N-terminal domain of MPP beta chain binds the catalytic metal

6. Protein Cytochrome bc1 core subunit 2 [63409] (3 species)

7. Species Cow (Bos taurus) [TaxId:9913] [56000] (18 PDB entries)
   Uniprot P23004

8. Domain d1bgyb1: 1bgy B:21-235 [58956]
   Other proteins in same PDB: d1bgya1, d1bgya2, d1bgyc2, d1bgyc3, d1bgyd2, d1bgyd3, d1bgye_, d1bgyf_, d1bgyg_, d1bgyh_, d1bgyi_, d1bgyj_, d1bgyk_, d1bgym1, d1bgym2, d1bgyo2, d1bgyo3, d1bgyp2, d1bgyp3, d1bgyq1, d1bgyq2, d1bgyr_, d1bgys_, d1bgyt_, d1bgyu_, d1bgyv_, d1bgyw_
   complexed with fes, hec, hem

Details for d1bgyb1

PDB Entry: 1bgy, 3 Å

PDB Description: cytochrome bc1 complex from bovine

PDB Compounds: (B:) cytochrome bc1 complex

SCOPe Domain Sequences for d1bgyb1:

Sequence; same for both SEQRES and ATOM records:

>d1bgyb1 d.185.1.1 (B:21-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}
pqdleftrlpnglviaslenyapasriglfikagsryensnnlgtshllrlasslttkga
ssfkitrgieavggklsvtstrenmaytveclrddvdilmefllnvttapefrrwevaal
qpqlridkavalqnpqahvienlhaaayrnalanslycpdyrigkvtpvelhdyvqnhft
sarmaliglgvshpvlkqvaeqflnirgglglsga

Timeline for d1bgyb1:

• d1bgyb1 first appeared in SCOP 1.57
  
• d1bgyb1 appears in SCOPe 2.05
  
• d1bgyb1 appears in SCOPe 2.07
  
• d1bgyb1 appears in the current release, SCOPe 2.08