SCOPe 2.06: Family j.35.1.1: Transmembrane helical fragments

Lineage for Family j.35.1.1: Transmembrane helical fragments

1. Root: SCOPe 2.06

2. Class j: Peptides [58231] (133 folds)

3. Fold j.35: Transmembrane helical fragments [58517] (1 superfamily)

4. Superfamily j.35.1: Transmembrane helical fragments [58518] (1 family)

5. Family j.35.1.1: Transmembrane helical fragments [58519] (30 proteins)
   the member of this family may be not related

Proteins:

1. Active domain of protein icp47 [58551] (1 species)

   • Species Herpes simplex virus type 1, strain 17 [TaxId:10298] [58552] (1 PDB entry)

2. alpha-subunit of nicotinic acetylcholine receptor [58538] (1 species)
   M3 transmembrane segment

   • Species Synthetic, based on Torpedo californica sequence [58539] (1 PDB entry)

3. Amphipathic domain of YopD [75745] (1 species)

   • Species Synthetic, Yersinia pestis-based [75746] (1 PDB entry)

4. ASLV fusion peptide [118400] (1 species)

   • Species Rous sarcoma virus [TaxId:11886] [118401] (1 PDB entry)
     Uniprot P03397 418-445

5. Bacteriorhodopsin fragments [58520] (1 species)

   • Species Halobacterium halobium [TaxId:2242] [58521] (3 PDB entries)

6. Band 3 [58524] (1 species)

   • Species Synthetic peptides based on human band 3 sequence [58525] (9 PDB entries)

7. beta-Adrenoreceptor [58530] (1 species)

   • Species Turkey (Meleagris gallopavo) [TaxId:9103] [58531] (1 PDB entry)

8. BH3 domain of proapoptotic protein Bim [310747] (1 species)
   Pfam PF08945; interaction with Bcl-x described in 14499110

   • Species Mouse (Mus musculus) [TaxId:10090] [311001] (1 PDB entry)

9. Cystic fibrosis transmembrane conductance regulator [58545] (1 species)

   • Species Synthetic [58546] (4 PDB entries)

10. Cytoplasmic domain of p23 [58549] (1 species)

    • Species Synthetic, based on Oryctolagus cuniculus sequence [58550] (2 PDB entries)

11. Dimeric transmembrane domain of glycophorin A [58532] (1 species)
    right-hand twisted coiled coil

    • Species Human (Homo sapiens) [TaxId:9606] [58533] (1 PDB entry)

12. F1F0 ATP synthase subunit C fragments [58534] (1 species)

    • Species Escherichia coli [TaxId:562] [58535] (1 PDB entry)

13. fragment of hepatitis C envelope glycoprotein E (residues 350-370) [58553] (1 species)

    • Species Synthetic [58554] (1 PDB entry)

14. Glycine receptor alpha-1 chain [103733] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [103734] (2 PDB entries)
      Uniprot P23415 281-337

15. Matrix protein M2 transmembrane peptide [82976] (2 species)

    1. Species Influenza A virus [TaxId:11320] [161299] (1 PDB entry)

    2. Species Synthetic, Inluenza A virus-based [82977] (3 PDB entries)

16. Membrane anchor domain of the nonstructural protein 5a (NS5a) [111509] (1 species)

    • Species Hepatitis C virus [TaxId:11103] [111510] (5 PDB entries)
      Uniprot P27958 1972-2003

17. Membrane binding peptide of semliki forest virus mRNA capping enzyme nsp1 [64629] (1 species)

    • Species Synthetic [64630] (1 PDB entry)

18. Membrane domain of the subunit b of ATP synthase [58536] (1 species)

    • Species Escherichia coli [TaxId:562] [58537] (1 PDB entry)

19. Membrane spanning segment 2 (M2) of the acetylcholine receptor [58540] (2 species)

    1. Species Norway rat (Rattus norvegicus) [TaxId:10116] [58541] (2 PDB entries)

    2. Species Pacific electric ray (Torpedo californica) [TaxId:7787] [58542] (2 PDB entries)

20. N-terminal membrane anchor of the glucose-specific IIa component [90284] (1 species)

    • Species Escherichia coli [TaxId:562] [90285] (1 PDB entry)
      amphipathic helix; this region is partly disordered in the crystal structure of the whole protein seepdb:d1gla CH F

21. Neu/erbb-2 membrane spanning segment [64627] (1 species)

    • Species Synthetic, based on Rattus norvegicus sequence [64628] (1 PDB entry)

22. Pheromone alpha factor receptor [103731] (1 species)

    • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [103732] (1 PDB entry)

23. Potassium channel fragment L45 [75743] (1 species)

    • Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [75744] (2 PDB entries)

24. Pulmonary surfactant-associated polypeptide C (SP-C) [58526] (1 species)

    • Species Pig (Sus scrofa) [TaxId:9823] [58527] (1 PDB entry)

25. Rhodopsin fragments [58522] (1 species)

    • Species Synthetic, based on Bos taurus sequence [58523] (6 PDB entries)

26. Sarcolipin [70008] (1 species)

    • Species Synthetic [70009] (1 PDB entry)

27. Second repeat (is2mic) from voltage-gated sodium channel [58547] (1 species)

    • Species Synthetic, based on Rattus norvegicus sequence [58548] (1 PDB entry)

28. Surfactant Protein B (SP-B) miniprotein constructs [58528] (1 species)

    • Species Synthetic, based on Homo sapiens sequence [58529] (7 PDB entries)
      Uniprot P07988 208-225,263-278

29. Transmembrane segment 2 of NMDA receptor NR1 [58543] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [58544] (1 PDB entry)

30. Vpu protein [103735] (1 species)

    • Species Human immunodeficiency virus type 1, HIV-1 [TaxId:11676] [103736] (3 PDB entries)

More info for Family j.35.1.1: Transmembrane helical fragments

Timeline for Family j.35.1.1: Transmembrane helical fragments:

• Family j.35.1.1: Transmembrane helical fragments first appeared (with stable ids) in SCOP 1.55
  
• Family j.35.1.1: Transmembrane helical fragments appears in SCOPe 2.05
  
• Family j.35.1.1: Transmembrane helical fragments appears in SCOPe 2.07
  
• Family j.35.1.1: Transmembrane helical fragments appears in the current release, SCOPe 2.08