SCOP 1.57: Family j.35.1.1: Transmembrane helical fragments

Lineage for Family j.35.1.1: Transmembrane helical fragments

1. Root: SCOP 1.57
2. Class j: Peptides [58231] (84 folds)
3. Fold j.35: Transmembrane helical fragments [58517] (1 superfamily)
4. Superfamily j.35.1: Transmembrane helical fragments [58518] (1 family)
5. Family j.35.1.1: Transmembrane helical fragments [58519] (19 proteins)

Proteins:

1. Active domain of protein icp47 [58551] (1 species)
   • Species Herpes simplex virus type 1, strain 17 [TaxId:10298] [58552] (1 PDB entry)
2. alpha-subunit of nicotinic acetylcholine receptor [58538] (1 species)
   • Species Synthetic, based on Torpedo californica sequence [58539] (1 PDB entry)
3. Bacteriorhodopsin fragments [58520] (1 species)
   • Species Halobacterium halobium [TaxId:2242] [58521] (3 PDB entries)
4. Band 3 [58524] (1 species)
   • Species Synthetic peptides based on human band 3 sequence [58525] (9 PDB entries)
5. beta-Adrenoreceptor [58530] (1 species)
   • Species Turkey (Meleagris gallopavo) [TaxId:9103] [58531] (1 PDB entry)
6. Cystic fibrosis transmembrane conductance regulator [58545] (1 species)
   • Species Synthetic [58546] (4 PDB entries)
7. Cytoplasmic domain of p23 [58549] (1 species)
   • Species Synthetic, based on Oryctolagus cuniculus sequence [58550] (2 PDB entries)
8. Dimeric transmembrane domain of glycophorin A [58532] (1 species)
   • Species Human (Homo sapiens) [TaxId:9606] [58533] (1 PDB entry)
9. F1F0 ATP synthase subunit c (residues 9-26, 52-79) [58534] (1 species)
   • Species Escherichia coli [TaxId:562] [58535] (1 PDB entry)
10. fragment of hepatitis C envelope glycoprotein E (residues 350-370) [58553] (1 species)
    • Species Synthetic [58554] (1 PDB entry)
11. Membrane binding peptide of semliki forest virus mRNA capping enzyme nsp1 [64629] (1 species)
    • Species Synthetic [64630] (1 PDB entry)
12. Membrane domain of the subunit b of ATP synthase [58536] (1 species)
    • Species Escherichia coli [TaxId:562] [58537] (1 PDB entry)
13. Membrane spanning segment 2 (M2) of the acetylcholine receptor [58540] (2 species)
    1. Species Pacific electric ray (Torpedo californica) [TaxId:7787] [58542] (2 PDB entries)
    2. Species Rat (Rattus norvegicus) [TaxId:10116] [58541] (2 PDB entries)
14. N-terminal segment of surfactant protein B [58528] (1 species)
    • Species Synthetic, based on Homo sapiens sequence [58529] (1 PDB entry)
15. Neu/erbb-2 membrane spanning segment [64627] (1 species)
    • Species Synthetic, based on Rattus norvegicus sequence [64628] (1 PDB entry)
16. Pulmonary surfactant-associated polypeptide C (SP-C) [58526] (1 species)
    • Species Pig (Sus scrofa) [TaxId:9823] [58527] (1 PDB entry)
17. Rhodopsin fragments [58522] (1 species)
    • Species Synthetic, based on Bos taurus sequence [58523] (5 PDB entries)
18. Second repeat (is2mic) from voltage-gated sodium channel [58547] (1 species)
    • Species Synthetic, based on Rattus norvegicus sequence [58548] (1 PDB entry)
19. Transmembrane segment 2 of NMDA receptor NR1 [58543] (1 species)
    • Species Human (Homo sapiens) [TaxId:9606] [58544] (1 PDB entry)

More info for Family j.35.1.1: Transmembrane helical fragments

Timeline for Family j.35.1.1: Transmembrane helical fragments:

• Family j.35.1.1: Transmembrane helical fragments first appeared (with stable ids) in SCOP 1.55
  
• Family j.35.1.1: Transmembrane helical fragments appears in SCOP 1.59
  
• Family j.35.1.1: Transmembrane helical fragments appears in the current release, SCOPe 2.08