SCOPe 2.08: Protein: Gramicidin

Lineage for Protein: Gramicidin

Root: SCOPe 2.08
Class j: Peptides [58231] (151 folds)
Fold j.1: Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1 superfamily)
Superfamily j.1.1: Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58233] (2 families)
Family j.1.1.1: Gramicidin [58234] (1 protein)
Protein Gramicidin [58235] (1 species)
different conformations

Species:

Bacillus brevis [TaxId:1393] [58236] (21 PDB entries)
1. Domains for 1al4:
  1. Domain d1al4a_: 1al4 A: [46041]
    complexed with pol
  2. Domain d1al4b_: 1al4 B: [46042]
    complexed with pol
2. Domains for 1alx:
  1. Domain d1alxa_: 1alx A: [46043]
    complexed with moh
  2. Domain d1alxb_: 1alx B: [46044]
    complexed with moh
3. Domains for 1alz:
  1. Domain d1alza_: 1alz A: [46039]
    complexed with eoh
  2. Domain d1alzb_: 1alz B: [46040]
    complexed with eoh
4. Domains for 1av2:
  1. Domain d1av2a_: 1av2 A: [46045]
    complexed with cl, cs, moh
  2. Domain d1av2b_: 1av2 B: [46046]
    complexed with cl, cs, moh
  3. Domain d1av2c_: 1av2 C: [46047]
    complexed with cl, cs, moh
  4. Domain d1av2d_: 1av2 D: [46048]
    complexed with cl, cs, moh
5. Domains for 1bdw:
  1. Domain d1bdwa_: 1bdw A: [46031]
    complexed with acy
  2. Domain d1bdwb_: 1bdw B: [46032]
    complexed with acy
6. Domains for 1c4d:
  1. Domain d1c4da_: 1c4d A: [46049]
    complexed with cl, cs, moh
  2. Domain d1c4db_: 1c4d B: [46050]
    complexed with cl, cs, moh
  3. Domain d1c4dc_: 1c4d C: [46051]
    complexed with cl, cs, moh
  4. Domain d1c4dd_: 1c4d D: [46052]
    complexed with cl, cs, moh
7. Domains for 1gmk:
  1. Domain d1gmka_: 1gmk A: [46053]
    complexed with k, moh, scn
  2. Domain d1gmkb_: 1gmk B: [46054]
    complexed with k, moh, scn
  3. Domain d1gmkc_: 1gmk C: [46055]
    complexed with k, moh, scn
  4. Domain d1gmkd_: 1gmk D: [46056]
    complexed with k, moh, scn
8. Domains for 1grm:
  1. Domain d1grma_: 1grm A: [46035]
  2. Domain d1grmb_: 1grm B: [46036]
9. Domains for 1jno:
  1. Domain d1jnoa_: 1jno A: [63198]
  2. Domain d1jnob_: 1jno B: [63199]
10. Domains for 1jo3:
  1. Domain d1jo3a_: 1jo3 A: [63203]
  2. Domain d1jo3b_: 1jo3 B: [63204]
11. Domains for 1jo4:
  1. Domain d1jo4a_: 1jo4 A: [63205]
  2. Domain d1jo4b_: 1jo4 B: [63206]
12. Domains for 1kqe:
  1. Domain d1kqea_: 1kqe A: [77486]
    complexed with sin
  2. Domain d1kqeb_: 1kqe B: [77487]
    complexed with sin
13. Domains for 1mag:
  1. Domain d1maga_: 1mag A: [46033]
  2. Domain d1magb_: 1mag B: [46034]
14. Domains for 1mic:
  1. Domain d1mica_: 1mic A: [46037]
  2. Domain d1micb_: 1mic B: [46038]
15. Domains for 1ng8:
  1. Domain d1ng8a_: 1ng8 A: [80478]
  2. Domain d1ng8b_: 1ng8 B: [80479]
16. Domains for 1nrm:
  1. Domain d1nrma_: 1nrm A: [80695]
  2. Domain d1nrmb_: 1nrm B: [80696]
17. Domains for 1nru:
  1. Domain d1nrua_: 1nru A: [80697]
  2. Domain d1nrub_: 1nru B: [80698]
18. Domains for 1nt5:
  1. Domain d1nt5a_: 1nt5 A: [80726]
  2. Domain d1nt5b_: 1nt5 B: [80727]
19. Domains for 1nt6:
  1. Domain d1nt6a_: 1nt6 A: [80728]
  2. Domain d1nt6b_: 1nt6 B: [80729]
20. Domain for 1tk2:
  - Domain d1tk2b_: 1tk2 B: [107068]
    Other proteins in same PDB: d1tk2a_
    complexed with ca
21. Domains for 1tkq:
  1. Domain d1tkqa_: 1tkq A: [107108]
    Mini-gramicidin A
    complexed with sin
  2. Domain d1tkqb_: 1tkq B: [107109]
    Mini-gramicidin A
    complexed with sin

More info for Protein Gramicidin from j.1.1.1: Gramicidin

Timeline for Protein Gramicidin from j.1.1.1: Gramicidin:

Protein Gramicidin from j.1.1.1: Gramicidin first appeared (with stable ids) in SCOP 1.55
Protein Gramicidin from j.1.1.1: Gramicidin appears in SCOPe 2.07