Lineage for Class j: Peptides

  1. Root: SCOP 1.69
  2. 528313Class j: Peptides [58231] (116 folds)

Folds:

  1. 528314j.1: Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1 superfamily)
  2. 528395j.2: Lantibiotic peptides [58243] (1 superfamily)
    peptide antibiotic
  3. 528417j.3: Antimicrobial beta-hairpin [58251] (1 superfamily)
    contains beta-hairpin crosslinked by disulfide bridge(s)
  4. 528461j.4: Antimicrobial helix [58268] (1 superfamily)
    antibiotic peptide
  5. 528495j.5: Macrocyclic bacteriocins [58278] (1 superfamily)
    macrocyclic antimicrobial peptide; bacteriocin
  6. 528507j.6: Peptide hormones [58283] (1 superfamily)
    contains one alpha-helix
  7. 528584j.7: delta toxin-like [58307] (2 superfamilies)
    single alpha helix
  8. 528602j.8: PSP1-like [58312] (1 superfamily)
  9. 528617j.9: Arg-rich RNA binding peptides [58321] (6 superfamilies)
  10. 528675j.10: DNA-binding domains of HMG-I(Y) [58348] (1 superfamily)
  11. 528684j.11: VPR protein fragments [58353] (1 superfamily)
  12. 528700j.12: Inactivation gate of potassium and sodium channels [58358] (1 superfamily)
  13. 528719j.13: Coagulation factor VIII, membrane-binding peptide [58368] (1 superfamily)
  14. 528726j.14: Phosphocholine cytidylyltransferase membrane-binding peptides [58373] (1 superfamily)
  15. 528733j.15: Parathyroid hormone fragments (residues between 1 and 39) [58378] (1 superfamily)
  16. 528755j.16: Corticotropin releasing hormone [58384] (1 superfamily)
  17. 528762j.17: Liposaccharide-binding protein CAP18 (residues 106-137) [58389] (1 superfamily)
  18. 528768j.18: Polymorphic antigen SPAM-H1 (residues 90-127) [58394] (1 superfamily)
  19. 528774j.19: Insect toxins [58399] (1 superfamily)
  20. 528789j.20: Tertiapin [58404] (1 superfamily)
    small disulfide-rich peptide
  21. 528795j.21: Antifreeze polypeptide HPLC-6 [58409] (1 superfamily)
  22. 528805j.22: Troponin I fragments [58414] (1 superfamily)
  23. j.23: Pilin fragments [58420] (1 superfamily)
  24. 528829j.24: RP71935 [58427] (1 superfamily)
  25. 528836j.25: Atrial natriuretic peptide [58432] (1 superfamily)
  26. j.26: Compstatin [58437] (1 superfamily)
  27. j.27: Membrane-bound antimicrobial peptides [58442] (1 superfamily)
  28. 528861j.28: Endothelin-like [58449] (1 superfamily)
    small disulfide-rich
  29. j.29: Heat-stable enterotoxin (HSE) [58457] (1 superfamily)
  30. 528889j.30: Conotoxins [58464] (1 superfamily)
    disulfide-rich fold
  31. 528979j.31: Conantokin [58494] (1 superfamily)
  32. j.32: Contryphan-R [58502] (1 superfamily)
  33. 529002j.33: Kappa-hefutoxin-like [58507] (2 superfamilies)
    hairpin of two short helices crosslinked with two disulfides
  34. j.34: Bradykinin [58512] (1 superfamily)
  35. 529025j.35: Transmembrane helical fragments [58517] (1 superfamily)
  36. 529158j.36: Topogenic peptides [58555] (4 superfamilies)
  37. 529179j.37: Phospholamban fragments [58568] (1 superfamily)
  38. j.38: Fragments of bowman-birk inhibitor [58574] (1 superfamily)
  39. 529198j.39: Fragments of apolipoproteins [58579] (1 superfamily)
  40. 529228j.40: Transactivation protein TAT [58593] (1 superfamily)
  41. 529240j.41: Proline pipe [58599] (1 superfamily)
  42. 529246j.42: Amyloid peptides [58604] (1 superfamily)
  43. 529272j.43: Gelsolin fragment (residues 150-169) [58609] (1 superfamily)
  44. j.44: Acetylcholine receptor fragment (residues alpha 67-76) [58614] (1 superfamily)
  45. 529285j.45: Thrombomodulin EGF domain fragment (residues 409-426) [58619] (1 superfamily)
  46. 529293j.47: Capsid protein major homology region peptide analog [58629] (1 superfamily)
  47. 529301j.48: CD4 and CD8 receptor regions [58635] (1 superfamily)
  48. 529311j.49: Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58640] (1 superfamily)
  49. 529318j.50: GroES fragments [58645] (1 superfamily)
  50. 529328j.51: cAMP and cGMP phosphodiesterase (PDE) fragments [58650] (1 superfamily)
  51. 529337j.52: HIV-1 Nef protein fragments [58657] (1 superfamily)
  52. 529345j.53: HIV-1 envelope gp120 protein fragments [58662] (1 superfamily)
  53. 529357j.54: Hepatitis C virus N-terminal capsid protein fragment 2-45 [58667] (1 superfamily)
  54. 529363j.55: P27(KIP1) fragment 22-106 [58672] (1 superfamily)
  55. j.56: Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58677] (1 superfamily)
  56. j.57: alpha-lactalbumin peptide model [58682] (1 superfamily)
  57. 529382j.58: Coat protein-binding domain of bacteriophage P22 scaffolding protein [58687] (1 superfamily)
  58. j.59: Immunoreceptor tyrosine kinase activation motif, ITAM [58692] (1 superfamily)
  59. 529395j.60: Integrin fragments [58697] (1 superfamily)
  60. 529418j.61: Human glutathione reductase (HGR) inhibitor [58702] (1 superfamily)
  61. j.62: Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58707] (1 superfamily)
  62. j.63: Histone H3 C-terminal fragment 130-135 [58712] (1 superfamily)
  63. 529440j.64: Smad-binding domain of Sara [58717] (1 superfamily)
  64. 529448j.65: Peptide derived from p-21 activated kinase [58722] (1 superfamily)
  65. 529456j.66: pak1 autoregulatory domain [58728] (1 superfamily)
  66. 529463j.67: Translocated intimin receptor (tir) intimin-binding domain [58733] (1 superfamily)
  67. 529469j.68: Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58738] (1 superfamily)
  68. 529483j.69: Tumor suppressor p53 fragments [58743] (1 superfamily)
  69. j.70: FxFG nucleoporin repeats [58748] (1 superfamily)
  70. 529501j.71: beta-Catenine bound non-globular protein regions [58753] (1 superfamily)
  71. 529520j.72: Synaptobrevin-II fragments [58758] (1 superfamily)
  72. j.73: VMIP-II fragment [58763] (1 superfamily)
  73. j.74: Papillomavirus e6-interacting peptide of e6ap [58768] (1 superfamily)
  74. 529539j.75: Isolated insulin B-chain [58773] (1 superfamily)
  75. j.76: N-terminal hairpin of ubiquitin (residues 1-17) [58778] (1 superfamily)
  76. 529551j.77: alpha-helical hairpin of p8mtcp1 [58783] (1 superfamily)
  77. 529557j.78: C-terminal fragment of thermolysin [63387] (1 superfamily)
  78. 529564j.79: Influenza hemagglutinin fragments [64631] (1 superfamily)
  79. 529571j.80: Syndecan-4 cytoplasmic domain [64638] (1 superfamily)
  80. 529580j.81: Pituitary adenylate cyclase activating polypeptide, pacap21 [64643] (1 superfamily)
  81. 529586j.82: Cholecystokinin receptor fragments [64648] (1 superfamily)
  82. j.83: Trypsin inhibitor SFTIf-1 [64653] (1 superfamily)
  83. 529602j.84: Ribosomal protein L10 [64658] (1 superfamily)
  84. 529625j.85: HIV-1 gp41 fragments [70010] (1 superfamily)
  85. 529650j.86: Actin-binding peptides [70017] (1 superfamily)
  86. 529659j.87: Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70022] (1 superfamily)
  87. 529665j.88: Prepeptide of 5-ALAS [70027] (1 superfamily)
  88. 529672j.89: the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70032] (1 superfamily)
  89. 529678j.90: Prion protein fragments [70037] (1 superfamily)
  90. 529689j.91: Tumor suppressor protein p19-ARF fragment [70042] (1 superfamily)
  91. j.92: Antennapedia homeodomain fragments [70047] (1 superfamily)
  92. 529704j.93: Sheep myeloid antimicrobial peptide SMAP29 based peptides [75751] (1 superfamily)
  93. 529713j.94: alpha-2a adrenergic receptor pepride t3-i2 [75756] (1 superfamily)
  94. 529722j.95: Catestatin fragment from chromogranin A [75761] (1 superfamily)
  95. 529729j.96: Transactivation domain [81275] (1 superfamily)
  96. 529742j.97: BRCA2 BRC4 repeat [82985] (1 superfamily)
  97. j.98: Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82992] (1 superfamily)
  98. 529754j.99: N-terminal fragment of gastric H/K-ATPase [82997] (1 superfamily)
  99. 529761j.100: Barstar fragment [83002] (1 superfamily)
  100. j.101: Cannabinoid receptor 1 (CB1) fragment [83007] (1 superfamily)
  101. j.102: Angiotensin [90269] (1 superfamily)
  102. j.103: Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90290] (1 superfamily)
  103. 529789j.104: TBP-binding domain of the transcription factor IIIb Brf1 subunit [90297] (1 superfamily)
  104. 529798j.105: Ubiquitin interacting motif (UIM) [90302] (1 superfamily)
  105. 529811j.106: Leucocin-like bacteriocin [100898] (1 superfamily)
    consists of a conserved, disulfide-containing N-terminal region (forming a beta-sheet) and a C-terminal helix
  106. 529828j.107: Penaeidin-3a [103726] (1 superfamily)
  107. 529834j.108: Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103748] (1 superfamily)
  108. j.109: Metal-binding peptide from MerP [103758] (1 superfamily)
  109. j.110: Marinostatin, MstI [103763] (1 superfamily)
  110. j.111: Cross-reactive peptides from 60S acidic ribosomal protein p2 [103768] (1 superfamily)
  111. 529861j.112: Nuclear receptor coactivator Src-1 [100901] (1 superfamily)
  112. 529870j.113: NTR, cyclotide processing element [111516] (1 superfamily)
  113. 529879j.114: HMG-box transcription factor 1 fragments [111523] (1 superfamily)
  114. j.115: MAD protein fragments [111528] (1 superfamily)
  115. 529891j.116: Fragments of TNF receptors [111533] (1 superfamily)
  116. 529897j.117: Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111538] (1 superfamily)

More info for Class j: Peptides

Timeline for Class j: Peptides: