Lineage for Class j: Peptides

  1. Root: SCOP 1.63
  2. 274027Class j: Peptides [58231] (101 folds)

Folds:

  1. 274028j.1: Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1 superfamily)
  2. j.2: Lantibiotic peptides [58243] (1 superfamily)
    peptide antibiotic
  3. 274111j.3: Antimicrobial beta-hairpin [58251] (1 superfamily)
    contains beta-hairpin crosslinked by disulphide bridge(s)
  4. 274154j.4: Antimicrobial helix [58268] (1 superfamily)
    antibiotic peptide
  5. 274189j.5: Microcin J25 [58278] (1 superfamily)
    macrocyclic antimicrobial peptide; bacteriocin
  6. 274196j.6: Peptide hormones [58283] (1 superfamily)
    contains one alpha-helix
  7. 274256j.7: delta-Toxin [58307] (1 superfamily)
  8. 274263j.8: PSP1-like [58312] (1 superfamily)
  9. 274278j.9: Arg-rich RNA binding peptides [58321] (6 superfamilies)
  10. 274334j.10: DNA-binding domains of HMG-I(Y) [58348] (1 superfamily)
  11. 274343j.11: VPR protein fragments [58353] (1 superfamily)
  12. 274358j.12: Inactivation gate of potassium and sodium channels [58358] (1 superfamily)
  13. 274373j.13: Coagulation factor VIII, membrane-binding peptide [58368] (1 superfamily)
  14. 274380j.14: Phosphocholine cytidylyltransferase membrane-binding peptides [58373] (1 superfamily)
  15. 274387j.15: Parathyroid hormone fragments (residues between 1 and 39) [58378] (1 superfamily)
  16. 274409j.16: Corticotropin releasing hormone [58384] (1 superfamily)
  17. 274416j.17: Liposaccharide-binding protein CAP18 (residues 106-137) [58389] (1 superfamily)
  18. 274422j.18: Polymorphic antigen SPAM-H1 (residues 90-127) [58394] (1 superfamily)
  19. 274428j.19: Mellitin-like toxins [58399] (1 superfamily)
  20. 274439j.20: Tertiapin [58404] (1 superfamily)
    small disulphide-rich peptide
  21. 274445j.21: Antifreeze polypeptide HPLC-6 [58409] (1 superfamily)
  22. 274455j.22: Troponin I fragments [58414] (1 superfamily)
  23. j.23: Pilin fragments [58420] (1 superfamily)
  24. 274479j.24: RP71935 [58427] (1 superfamily)
  25. 274486j.25: Atrial natriuretic peptide [58432] (1 superfamily)
  26. j.26: Compstatin [58437] (1 superfamily)
  27. j.27: Membrane-bound antimicrobial peptides [58442] (1 superfamily)
  28. 274509j.28: Endothelin-like [58449] (1 superfamily)
    small disulphide-rich
  29. j.29: Heat-stable enterotoxin (HSE) [58457] (1 superfamily)
  30. 274536j.30: Conotoxins [58464] (1 superfamily)
    disulphide-rich fold
  31. 274602j.31: Conantokin [58494] (1 superfamily)
  32. j.32: Contryphan-R [58502] (1 superfamily)
  33. 274624j.33: Kappa-hefutoxin-like [58507] (2 superfamilies)
    hairpin of two short helices crosslinked with two disulphides
  34. j.34: Bradykinin [58512] (1 superfamily)
  35. 274644j.35: Transmembrane helical fragments [58517] (1 superfamily)
  36. 274750j.36: Topogenic peptides [58555] (3 superfamilies)
  37. 274766j.37: Phospholamban fragments [58568] (1 superfamily)
  38. j.38: Fragments of bowman-birk inhibitor [58574] (1 superfamily)
  39. 274783j.39: Fragments of apolipoproteins [58579] (1 superfamily)
  40. 274811j.40: Transactivation protein TAT [58593] (1 superfamily)
  41. 274823j.41: Proline pipe [58599] (1 superfamily)
  42. 274829j.42: Amyloid peptides [58604] (1 superfamily)
  43. 274847j.43: Gelsolin fragment (residues 150-169) [58609] (1 superfamily)
  44. j.44: Acetylcholine receptor fragment (residues alpha 67-76) [58614] (1 superfamily)
  45. 274860j.45: Thrombomodulin EGF domain fragment (residues 409-426) [58619] (1 superfamily)
  46. 274868j.46: MoMLV p15 fragment (residues 409-426) [58624] (1 superfamily)
  47. 274874j.47: Capsid protein major homology region peptide analog [58629] (1 superfamily)
  48. j.48: CD4 receptor peptide, res. 403-419 [58635] (1 superfamily)
  49. 274888j.49: Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58640] (1 superfamily)
  50. j.50: GroES, fragment of mobile loop [58645] (1 superfamily)
  51. 274901j.51: cAMP and cGMP phosphodiesterase (PDE) fragments [58650] (1 superfamily)
  52. 274910j.52: HIV-1 Nef protein fragments [58657] (1 superfamily)
  53. 274918j.53: HIV-1 envelope gp120 protein fragments [58662] (1 superfamily)
  54. 274930j.54: Hepatitis C virus N-terminal capsid protein fragment 2-45 [58667] (1 superfamily)
  55. 274936j.55: P27(KIP1) fragment 22-106 [58672] (1 superfamily)
  56. j.56: Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58677] (1 superfamily)
  57. j.57: alpha-lactalbumin peptide model [58682] (1 superfamily)
  58. j.58: Coat protein-binding domain of bacteriophage P22 scaffolding protein [58687] (1 superfamily)
  59. j.59: Immunoreceptor tyrosine kinase activation motif, ITAM [58692] (1 superfamily)
  60. 274968j.60: Integrin fragments [58697] (1 superfamily)
  61. 274989j.61: Human glutathione reductase (HGR) inhibitor [58702] (1 superfamily)
  62. j.62: Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58707] (1 superfamily)
  63. j.63: Histone H3 C-terminal fragment 130-135 [58712] (1 superfamily)
  64. 275011j.64: Smad-binding domain of Sara [58717] (1 superfamily)
  65. 275019j.65: Peptide derived from p-21 activated kinase [58722] (1 superfamily)
  66. 275027j.66: pak1 autoregulatory domain [58728] (1 superfamily)
  67. 275034j.67: Translocated intimin receptor (tir) intimin-binding domain [58733] (1 superfamily)
  68. 275040j.68: Fragment 671-690 of the rabbit skeletal dihydropyridine receptor [58738] (1 superfamily)
  69. 275047j.69: C-terminal negative regulatory domain of p53 [58743] (1 superfamily)
  70. j.70: FxFG nucleoporin repeats [58748] (1 superfamily)
  71. 275061j.71: beta-Catenine bound non-globular protein regions [58753] (1 superfamily)
  72. 275080j.72: Synaptobrevin-II fragments [58758] (1 superfamily)
  73. j.73: VMIP-II fragment [58763] (1 superfamily)
  74. j.74: Papillomavirus e6-interacting peptide of e6ap [58768] (1 superfamily)
  75. 275099j.75: Isolated insulin B-chain [58773] (1 superfamily)
  76. j.76: N-terminal hairpin of ubiquitin (residues 1-17) [58778] (1 superfamily)
  77. 275111j.77: alpha-helical hairpin of p8mtcp1 [58783] (1 superfamily)
  78. 275117j.78: C-terminal fragment of thermolysin [63387] (1 superfamily)
  79. 275124j.79: Influenza hemagglutinin fragments [64631] (1 superfamily)
  80. 275131j.80: Syndecan-4 cytoplasmic domain [64638] (1 superfamily)
  81. 275140j.81: Pituitary adenylate cyclase activating polypeptide, pacap21 [64643] (1 superfamily)
  82. 275146j.82: Cholecystokinin receptor fragments [64648] (1 superfamily)
  83. j.83: Trypsin inhibitor SFTIf-1 [64653] (1 superfamily)
  84. 275162j.84: Ribosomal protein L10 [64658] (1 superfamily)
  85. j.85: HIV-1 gp41 fragments [70010] (1 superfamily)
  86. 275188j.86: Thymosin beta9 [70017] (1 superfamily)
  87. 275194j.87: Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70022] (1 superfamily)
  88. 275200j.88: Prepeptide of 5-ALAS [70027] (1 superfamily)
  89. 275207j.89: the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70032] (1 superfamily)
  90. 275213j.90: prion protein fragment [70037] (1 superfamily)
  91. 275220j.91: Tumor suppressor protein p19-ARF fragment [70042] (1 superfamily)
  92. j.92: Antennapedia homeodomain fragments [70047] (1 superfamily)
  93. 275234j.93: Sheep myeloid antimicrobial peptide SMAP29 based peptides [75751] (1 superfamily)
  94. 275243j.94: alpha-2a adrenergic receptor pepride t3-i2 [75756] (1 superfamily)
  95. 275252j.95: Catestatin fragment from chromogranin A [75761] (1 superfamily)
  96. 275259j.96: C-terminal activation domain (CTAD) of HIF-1alpha [81275] (1 superfamily)
  97. 275268j.97: BRCA2 BRC4 repeat [82985] (1 superfamily)
  98. j.98: Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82992] (1 superfamily)
  99. 275280j.99: N-terminal fragment of gastric H/K-ATPase [82997] (1 superfamily)
  100. 275287j.100: Barstar fragment [83002] (1 superfamily)
  101. j.101: Cannabinoid receptor 1 (CB1) fragment [83007] (1 superfamily)

More info for Class j: Peptides

Timeline for Class j: Peptides: